BtaEX6028080 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032288 | GCK
Description
Bos taurus glucokinase (hexokinase 4) (GCK), mRNA. [Source:RefSeq mRNA;Acc:NM_001102302]
Coordinates
chr4:77848338-77851371:+
Coord C1 exon
chr4:77848338-77848492
Coord A exon
chr4:77849567-77849686
Coord C2 exon
chr4:77851276-77851371
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACCTTGGTGTTGTCTTCCAGCTC
3' ss Score
9.96
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
AAGTTGGGGACTTCCTCTCCCTGGACCTGGGTGGCACCAACTTCCGGGTGATGCTGGTGAAGGTGGGAGAAGGCGAGGCGGGACAGTGGAGTGTGAAGACCACGCACCAGATGTACTCCATCCCCGAGGATGCCATGACGGGTACTGCTGAGATG
Seq A exon
CTCTTTGACTACATCTCTGAGTGCATCTCTGACTTCCTGGATAAGCATCAGATGAAGCATAAGAAGCTGCCCTTGGGCTTCACCTTCTCCTTTCCCGTGAGGCATGAAGACATTGACAAG
Seq C2 exon
GGCATCCTTCTCAACTGGACCAAGGGCTTCAAGGCCTCGGGAGCAGAAGGCAACAACATTGTGGGGCTCCTGCGAGATGCCATCAAGCGGAGAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032288-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(24.6=100)
A:
PF0034916=Hexokinase_1=FE(18.8=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGGGGACTTCCTCTCCC
R:
CTCTCCGCTTGATGGCATCTC
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]