MmuALTA1044273-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000093910 | Zfp853
Description
zinc finger protein 853 [Source:MGI Symbol;Acc:MGI:2685638]
Coordinates
chr5:143292227-143292864:-
Coord C1 exon
chr5:143292853-143292864
Coord A exon
chr5:143292345-143292349
Coord C2 exon
chr5:143292227-143292344
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCTTCCTTTATTCCTCTTAGCAC
3' ss Score
5.86
Exon sequences
Seq C1 exon
ATGCTGTTCCAG
Seq A exon
CACAG
Seq C2 exon
CCTGCTCCGGGAGACCCTGGTGTGACCGCCAGGATGGAGCTGGGCCCAGCAACCCAGACCTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000093910-1-5,1-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types