HsaALTA1059083-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000236609 | ZNF853
Description
zinc finger protein 853 [Source:HGNC Symbol;Acc:HGNC:21767]
Coordinates
chr7:6615617-6617307:+
Coord C1 exon
chr7:6615617-6616186
Coord A exon
chr7:6617185-6617189
Coord C2 exon
chr7:6617190-6617307
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACTGCTTCCTTCCTTTCAGCAC
3' ss Score
9.15
Exon sequences
Seq C1 exon
CGGCGCCCGCCCCGCCCCCGCCCCGGCCCCCGCGCGGCCCGGCCCAGGCCGCCCGCAGGCTCCGGGCACCTGTAGCCCCCGAGGACCCGCGTCGCCTGGCCGCCGCCGACCCCAGGCGGGGCCACCCCGTGGTGCCGACCCCGGGCGCCGGCCTGGATCCCGCTGCCCGCGATGGTCCCGGGGGGCCGGCCCTGAGCCCCGCGCGGGATTCGGGGCCCTGCCTCCCGCCCCAGCCCCCGCCGGAGAGTCTCCACCAACTTCTGCTCGGCCGCTCCTCTCAGCCCCTTCCCTTGGCCCAGGGCGACCTCGGCAGCCCAGAGGGCGTGGACCCTCCGGAGTGCCCAGAAAGCCCCCGGGGTGGCCCTGCGCCTCCTGGCTCTTTCTGGATGGAGGCGCCTCCGGAAGGAGCCGGCTGCACGCCGTGGCCTTCACCTCGCAGCCTCTGCTGACCACACCTCCCTAGCGCAGAGGCTGCCCGGGAGCAGGAAATGCTCCACCAG
Seq A exon
CACAG
Seq C2 exon
CCGACTCCCGGGAATCGGGGTCTGACCGCCAGGATGGAAGTGGGGCCAGCCACCGAGACCTTCGTGCTGGAACTTCAATGTCTTGAGGATGGGGGCCCAGGGCCTGACACCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236609-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGACCACACCTCCCTAG
R:
CTTCCATCCTGGCGGTCAGA
Band lengths:
98-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains