RnoALTA0001272-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030579 | AC126572.3
Description
NA
Coordinates
chr12:13323465-13324174:+
Coord C1 exon
chr12:13323465-13323565
Coord A exon
chr12:13324052-13324056
Coord C2 exon
chr12:13324057-13324174
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTTTCCTTTATTCCTCTTAGCAC
3' ss Score
6.44
Exon sequences
Seq C1 exon
TTGTAGCCACTGGTGACCACACCTCCCCTAGCGCAGAGGCTGCTGCCAGCAGCGGCGGCGGCGGCGGCGGCGGTGGCCGGCGGCGGGAAATGCTGTTCCAG
Seq A exon
CACAG
Seq C2 exon
CCTGCTCTGGGAGAACCTGGTGTGACGGCCAGGATGGAGCTGGGCCCAGCAACCCAGACTTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030579-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCCCCTAGCGCAGAG
R:
TCACACCAGGTTCTCCCAGAG
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]