MmuALTA1044722-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000097652 | Mhrt
Description
myosin heavy chain associated RNA transcript [Source:MGI Symbol;Acc:MGI:3642848]
Coordinates
chr14:54971410-54972912:+
Coord C1 exon
chr14:54971410-54971490
Coord A exon
chr14:54972765-54972771
Coord C2 exon
chr14:54972772-54972912
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TGCATTGCGCTTTTGCTCAGCCT
3' ss Score
3.34
Exon sequences
Seq C1 exon
CTTGTTGACCTGGGACTCGGCGATGTCCGCCCTCTCCTCCGCCTCATCCAGCTCGTGCTGCACCTTGCGGAACTTGGACAG
Seq A exon
CCTCCAG
Seq C2 exon
CTCATTCTCCAGCTCCCGGACCCGGGCCTCCAGCTTCTGCAGCTGCTTCTTGCCGCCCTTGAGGGCGATCTGCTCTGCCTCGTCCAGACGGTGCTGCAAGTCCTTGATGGTCTGCTCCATGTTCTTCTTCATGCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097652-10-9,10-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTGCGGAACTTGGACAG
R:
CAGAGCAGATCGCCCTCAAG
Band lengths:
98-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types