RnoALTA0001300-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000046229 | AC130940.1
Description
NA
Coordinates
chr15:33632416-33636835:+
Coord C1 exon
chr15:33632416-33632435
Coord A exon
chr15:33636688-33636793
Coord C2 exon
chr15:33636794-33636835
Length
106 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CGCATTGCGCTTCTGCTCAGCCT
3' ss Score
3.26
Exon sequences
Seq C1 exon
GATGGACGCTCTGGCCACAG
Seq A exon
CCTCCAGCTCATTCTCCAGCTCCCGGACCCGGGCCTCCAGCTTCTGCAGCTGCTTCTTGCCACCCTTGAGGGCGATCTGCTCTGCCTCGTCCAGCCGGTGCTGCAG
Seq C2 exon
GTCCTTGATGGTCTGCTCCATGTTCTTCTTCATGCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046229-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]