RnoEX0004461 @ rn6
Exon Skipping
Gene
ENSRNOG00000046229 | AC130940.1
Description
NA
Coordinates
chr15:33632416-33645355:+
Coord C1 exon
chr15:33632416-33632435
Coord A exon
chr15:33641739-33641990
Coord C2 exon
chr15:33645217-33645355
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTATTACTTCTTTTTTACAGTTT
3' ss Score
8.74
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GATGGACGCTCTGGCCACAG
Seq A exon
TTTGTAGAGAATTTGGACCAGGCAAGCCTCACTCTTAGAGAAGAAAGAGATGCAGACAGAATCCAAGGCCTATTGTTGCATTCTCTGCTTGGGCCAGGCCCTGAGTTCAGGCCTTACCTTGACCTCCTCCTCCAGCTGCCTCTTGAGGTCCTCCAGCTGCTGGGTATACGTGAGCTTGCCTCGGGTCAGCTGAGAGATAAGAGCCTCCTTCTCATCCAGCTGTCTGGACAGCTCCCCTGGGGAGGCATCAAG
Seq C2 exon
GTCCATGATGCTCTCCTGGGTCAGCTTCAGGTCACCCTCCAGCTTCCGCTTTGCTCGCTCCAGGTCCATGCGCACCTTCTTCTCCTGCTCCAGGGATCCCTCCAGCTGGCAGAGAGAAGAGCCAGCTATGAACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046229_MULTIEX1-3/4=C1-C2
Average complexity
ME(2-3[97=100])
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]