RnoEX0004457 @ rn6
Exon Skipping
Gene
ENSRNOG00000046229 | AC130940.1
Description
NA
Coordinates
chr15:33632416-33635226:+
Coord C1 exon
chr15:33632416-33632435
Coord A exon
chr15:33632828-33632897
Coord C2 exon
chr15:33635146-33635226
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTATCTCTTGCTCTTTTAGGCT
3' ss Score
12.38
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GATGGACGCTCTGGCCACAG
Seq A exon
GCTCTGGTCCACACATCTCCTTCCACTGTGATCCTCTTTAGACTCTACGGATTTCTCCACTGCTGCTCAG
Seq C2 exon
CTTGTTGACCTGGGACTCGGCAATGTCCGCCCTCTCCTCTGCCTCATCCAGCTCGTGCTGCACCTTGCGGAACTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046229-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000068212fB263
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]