RnoALTA0001300-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000046229 | AC130940.1
Description
NA
Coordinates
chr15:33632416-33636835:+
Coord C1 exon
chr15:33632416-33632435
Coord A exon
NA
Coord C2 exon
chr15:33636794-33636835
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCGTCCAGCCGGTGCTGCAGGTC
3' ss Score
1.33
Exon sequences
Seq C1 exon
GATGGACGCTCTGGCCACAG
Seq A exon
NA
Seq C2 exon
GTCCTTGATGGTCTGCTCCATGTTCTTCTTCATGCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046229-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]