MmuALTA1045390-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000108022 | Gm7298
Description
predicted gene 7298 [Source:MGI Symbol;Acc:MGI:3648717]
Coordinates
chr6:121760746-121761697:+
Coord C1 exon
chr6:121760746-121760855
Coord A exon
NA
Coord C2 exon
chr6:121761536-121761697
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
TTCTTCCTTGTTCAACTTAGGTC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GATTGGAGTTCAGTCGATCTGGAACGACTAAAATTGAAAGAACCACAAACAAGCTCATATTTCTGAAGGCAGATTCACATTTCAGACACGGAATTCCATTCTTTGTGAAA
Seq A exon
NA
Seq C2 exon
GTCCTCCTAGTGGATATCAAGGGTGACCCTATCCCAAATGAGAAAGTCTTCATCAAAGCACAAGAACTTGGCTATACCAGTGCTACTACCACTGATCAGCAAGGCCTGGCAAAGTTCTGTATAGACACTGATGGCTTCTCGGGCTCTTCCCTTCATATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000108022-9-11,9-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATTCACATTTCAGACACGG
R:
AGCCAAGTTCTTGTGCTTTGA
Band lengths:
115-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types