MmuALTA1045390-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000108022 | Gm7298
Description
predicted gene 7298 [Source:MGI Symbol;Acc:MGI:3648717]
Coordinates
chr6:121760746-121761697:+
Coord C1 exon
chr6:121760746-121760855
Coord A exon
chr6:121761501-121761535
Coord C2 exon
chr6:121761536-121761697
Length
35 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
CTTCTTTGCTGTATTTCCAGGCC
3' ss Score
8.06
Exon sequences
Seq C1 exon
GATTGGAGTTCAGTCGATCTGGAACGACTAAAATTGAAAGAACCACAAACAAGCTCATATTTCTGAAGGCAGATTCACATTTCAGACACGGAATTCCATTCTTTGTGAAA
Seq A exon
GCCTAAACTATACTTTTCTTCCTTGTTCAACTTAG
Seq C2 exon
GTCCTCCTAGTGGATATCAAGGGTGACCCTATCCCAAATGAGAAAGTCTTCATCAAAGCACAAGAACTTGGCTATACCAGTGCTACTACCACTGATCAGCAAGGCCTGGCAAAGTTCTGTATAGACACTGATGGCTTCTCGGGCTCTTCCCTTCATATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000108022-9-11,9-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATTCACATTTCAGACACGG
R:
AGCCAAGTTCTTGTGCTTTGA
Band lengths:
115-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types