MmuALTD0000465-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127264393-127270619:+
Coord C1 exon
chr3:127264393-127266136
Coord A exon
chr3:127266137-127266610
Coord C2 exon
chr3:127270546-127270619
Length
474 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
GTTTGATTCTTTCATTGCAGCCA
3' ss Score
7.78
Exon sequences
Seq C1 exon
ACAAGAAGACAGCAGACTTTCCCAGGATTCAGAGCGGTGGGAGAAGGAAGCTGTGCTTACAGATGATTCTTGTGTTCAGAAGAGCTGTGAGGATATAGGCTGCCGAGAAATTGTAGGAAAATTGCCACTCCTGTCATCTACCGATGACGAGCCTAAAGAGGCCCTCCCTGCTGATGGGACTCTGTTGTCAGAGTTCTGTGATAGAACCTGTGTGGGTTTCAATTCAGGACCTCATGGAGATGTAAAAACTGGCAAAGCACTAGAGGGACAGTGTCATAGTGACACAGGGAGCAGTTTGGACTCGTCGCTGGAGTGGAGTGAGGATGTAGCAGGGGACAGCAGAGAAGATGCTAGTCAATCTATCCAAGGCAATGCAATTAATTGTGGTGGTGTTTCACCCTCAAAGAAACCCAGAGGTGTAAACAGAAGCTTATACAGTCCTTATCTTCTAACCGCAGTCACTGACCCAGCGCCTGAGAACAGTGACCTGCTCTCAGAAG
Seq A exon
GTACCCAGCTTTTTATTTTGCAAAGTCACAGAGACAGAAATGATGAGCAGGTCTTATCACCAATCTCTAGCAGTGACATTAGTGGCCAGCTCTTGAGTACCACTCAGGATCACTTTGAGTGTCATGAACTAGAAGAATCCAGCACTCAAATTTCTAGTCCTTTATTTTATCCTATGGGAATCAAACATCCTATTTATAGAGACAGCGAAGCATATATTTCTGAGTCTAAAGAATTAGGAAGGATTAGAAGTTTGCCGTGTGATCATTTTGAAGTGGAAACTACACAGAGAAACCAGCAATCCTGGGCTACTTCTAAAAGTTCTTCAGAACTTTCTGAAGTAATAAATAACATGTCCCTTTTAAAGTCACAGTCTGAGCATAGCACAGCTTTAGGACACTTGACAATACTGAAGAAAAAGCACGCCTTTCCACATGAAGTTCCGCACAGTCGAGACCCAGATGTCAGTCCTAAAG
Seq C2 exon
CCAGGAAATCACCTGCCATAGAAGTTTCGCGTGCTCTGCTAGAGTGTCCTTGTGAGCATCGGGCTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-10-5,11-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTGGGTTTCAATTCAGGA
R:
CCGATGCTCACAAGGACACTC
Band lengths:
356-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: