MmuINT0003955 @ mm9
Intron Retention
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127264393-127270619:+
Coord C1 exon
chr3:127264393-127266136
Coord A exon
chr3:127266137-127270545
Coord C2 exon
chr3:127270546-127270619
Length
4409 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
GTTTGATTCTTTCATTGCAGCCA
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGTTTTCAAAGACCATATAAGATGCCAAAGAAAGTGACTATTACTGAGAACAGTGAACCTGCTGCCTCACTTGGTGATGAGAACCCTGGCCCGCCTGGCCCGAGACTTCTTCCCACATTCTCCAGCACACTTCCTTTGTTTCCCACTGTTGGTCAGAAAGATTTAACTCCTGTGTCAACGGATAATCAGAGTCCCATCACATTCAGCAACAGAGAGAGAAGCGACACACCTTTATCACTTCCTTCTTCATACTTCAAGATTAACACAAACACACTAGGTAAAGAGGACAAGCTTTGCTTTCCTGTCAGTTCTGAAACCAAACATTCAGACTCTTTACTGGCCAGTGAACCCATGAGAAGAAATGGTTTAGACTCTCACTGTCCTGGAGTTTCACAAAACGTCAGAAGCAAAGCCCAGATATTAGCTCTTCTGAAGTCCAGCTCAACTAACAGGAAGGATCTGCATGGTGAGATTCCAGGACACTTTCCTAAGATAGAACCACAGGGGTGTTTGAATATTATTTCTAAGCCAGAGGAAGACTATGCAGAAACACAGAGCATAGGGAATTTACGCTGTGAGCAGCAGTCAGAAAATCCTACAAGAACCACAAGCCGGTGGGCCAGGTATTTACCTTCCCAGAGATCACCTCCCTGTTCTGCTGCAGATGAGAATGATACAGAGGACAAACCAGAAGCCCAAGAAGATGTGAACATTTTTAACTTGTCTGAACTTTTACAAAAAAAGTCAGAGCTCTTTGAAACATGTTCCAAAAAGGGAGAATTACACAGTGAGGACAAGCCAGTAGATAATACTTGCCAATACTGGAATCAGGAGGATAACTTAGCACCTTCATTCTGTAAGAACAGCAGTGTCCTGGTTAGCTGCAGCAGTAAAGAGAATGCCAGTTTATTATCAGAATCTGACATTCAGTACAGTAGCAAAGTACCAGTTAATCAACATGAGAAGGTGTGGACTCGAGAAGGTTCTCAGGGGGCAGATGCGGATGCAGCATTGGAACCGGAGTATAGACCAGTGTCACCTTTGCCAGAAATAGGACATAAACAAACTGAAGTTGAAGCTTCTCTAAGTACCAGCTCTAGGATCTCTGACGACATTGCTGACATGGGTTCTAAAAGCAATGCTGATAGAGAAGATCTGAAAACTGTTCATAAAGCTGTGCAACCATTTTTGGAGGTTTCTTTTAATCTGAGCAACTTTGAGACCAGTGACACTGATGAGGCGTCACAAGAAGACAGCAGACTTTCCCAGGATTCAGAGCGGTGGGAGAAGGAAGCTGTGCTTACAGATGATTCTTGTGTTCAGAAGAGCTGTGAGGATATAGGCTGCCGAGAAATTGTAGGAAAATTGCCACTCCTGTCATCTACCGATGACGAGCCTAAAGAGGCCCTCCCTGCTGATGGGACTCTGTTGTCAGAGTTCTGTGATAGAACCTGTGTGGGTTTCAATTCAGGACCTCATGGAGATGTAAAAACTGGCAAAGCACTAGAGGGACAGTGTCATAGTGACACAGGGAGCAGTTTGGACTCGTCGCTGGAGTGGAGTGAGGATGTAGCAGGGGACAGCAGAGAAGATGCTAGTCAATCTATCCAAGGCAATGCAATTAATTGTGGTGGTGTTTCACCCTCAAAGAAACCCAGAGGTGTAAACAGAAGCTTATACAGTCCTTATCTTCTAACCGCAGTCACTGACCCAGCGCCTGAGAACAGTGACCTGCTCTCAGAAG
Seq A exon
GTACCCAGCTTTTTATTTTGCAAAGTCACAGAGACAGAAATGATGAGCAGGTCTTATCACCAATCTCTAGCAGTGACATTAGTGGCCAGCTCTTGAGTACCACTCAGGATCACTTTGAGTGTCATGAACTAGAAGAATCCAGCACTCAAATTTCTAGTCCTTTATTTTATCCTATGGGAATCAAACATCCTATTTATAGAGACAGCGAAGCATATATTTCTGAGTCTAAAGAATTAGGAAGGATTAGAAGTTTGCCGTGTGATCATTTTGAAGTGGAAACTACACAGAGAAACCAGCAATCCTGGGCTACTTCTAAAAGTTCTTCAGAACTTTCTGAAGTAATAAATAACATGTCCCTTTTAAAGTCACAGTCTGAGCATAGCACAGCTTTAGGACACTTGACAATACTGAAGAAAAAGCACGCCTTTCCACATGAAGTTCCGCACAGTCGAGACCCAGATGTCAGTCCTAAAGGTTAGAGTCACTGGCATTTTTTTTTTCCCCCTTTGTAGCTCAAAGGAAAGGAAGAGTCCTGCTGTCTACTGTATTAGAGATTTACATATGTGGTGGCTCACGTCTGTAATCTCAGCACTTGGGAAGTAGAGACAGTATTAGGAGAGTTCAGAATTATCTGCAACTGTCTCCTGAGTTTGAGACCAATCCCTCCATAGATGGGGCTGGAGATTACACAGTGTAATCCATGTATTTGGTAATGACAACTCTCAGAGAGGATGATATAGTGAAGACTAAGTCTTTGTAACACGGTTCCCTAGTCTATTTAACATTAACCAGTCTCTATGGCATCTCTTCTGAAATGCCCTGTGCATTCGCAGAACATTGACAGGTATACGCAAGGGTGTGTTCAGGTTAAGCATGCTAGTCCACAGCTGTACTGCTTTTCCTTTCCATGCCTACATCCCCAGCCCAGAGTGCGCCACAAGAGTGCCCTCTGCTTCGTCCGTTCTGTAATGTTTCTTTATTCTCACAGTGGGAACAGGCCCTTAAATGTCAGTATATTTTACTCGCGAAATCCCGCAGTGGGTAACAGATCATTGCGAAATTATCACAACAGTGTTACTGCCTGCAAAAATCTATCAACTTTGTAAAGTTCACAAGTTCTTTCCGAGTCACTGTGGTAAATATGGTTGAGCCTCTCTTAGATTTTATAATTCTGCCATTTTCATGATTTCATGCACTCTTCATTCGTTTCTCTGTTTTTAAAATGAGTGTTGGTCTTTTTAATCTTGACTTATAATCATTTTATTGTGTATTGGCAATATTAATCCTTTATGATATCTGTCGCATATGTGTGTTTGTTTGTTTGTTTTTCAACATAGGGTTTTTCTATGTAGCCTGGGCTATTCTAGAACTTGCTCTGTAGACCAGGCTGGCTTCAAATCTGACTGCTTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCGCAGGCTGGAGAGTTGGCTCAGTGTTTAAAAGCATTTGCTGTTGCAAAGGACCTGGGTTCAATTCCTAGCACACCTAGAGGCTTACCACCTCTTCTTGCACCAGCATGTCTGGTGCACAGACACACAAGATAAAACATTCATATACATAAAATAATAAAAAAGTCGTTCACCCCCACCTGGTTTATGTATGTGCATTTTAACACAGCATCTTGCTGTATAGCTGTGTACCCTTGCTGTATGGCTCTGACTGGTCTGTAATATATGAAGGTAAATGAACAACACTATGATACTCACTGTTAGAATTAAATACTTACTTATCTCAAGCCATTTTTGCTAAAAGTATGAGTAAATTCCTATACATTCTAAAATTTGAAATTTGGTTAAGTTTGATAGTAATTTTTTTTTTAAGATTTATTTATTTGGGCTGTCGAGATGGCTCAGTGGGTAGGAACACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCTAGCAACCACATGGTGGCTCACAACCACTCATAATGAGATCTGACATCCTCTTCTGCCACACCACGTCTGAAGACTGCTTCAGTGTGCTTTTGTATAATAATAAATAAATAAATCTCCAGGCCTGAGGGAGCAGGGCCAAGGGGAGTGAGCAGAGGTCCTAGAATTCAGTTCCCGAAGACGCCACATGAGGGCTCACAACCTTCTGTGCAGCTACAGTGTACTCATACATAAAATAAATAGATACATCTTTTAAAACAAAGATTTATTTATTTAATATATATCTATGTGTACACTTGTGTGCCAGAAGAAGGCATCAGATCTCATTTTGAAAGATTATGAGCCTCTATGTGGTTGCTGGAAATTGAACTTAGGACCTCTGGAAGAGCAGTCAGTTCTCTTAACTGCTGAGCCATCTCTCCAGCTCAGTAGTTTATTTTCTCAAACAAAAAAAAAAAAGATTTTTTTTTAAAGATTTATTTATTTTATATACGTGAGTACTCTGGAGCTGTCTTCAGACACACCAGAAGAGGGCATCCTATCCCACTACAGATGGTTTTGAGCCACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAGCTAAGAGTAGCTGCTGAGCCATCTCTCCAGCCCCAAATGAAAATCTTAATAATAAAAATGAAAGCCGGGTGTGGTGGTGCAGGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTAAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCGAAAAACCAAAAAAATAAAATAAAATAAAAATTAAAAAATAAATAAAAATAAAAATGAATGGATGTAACTGATTGATAAATTAAAATAAGAACATAGCATTATAATATGAATATTTGGGAAATACAGCATTTTATTTTGAGAAAATAATCAAATTGGAAGAGACGATAACATTGCTTTACAACTATTCTGTGATGTGGTCATGCTCTGAGATGAGCTTAAACACCAACTATAGAATAATTGGTCACACAAGGCATGCAAGACTGACTTCTTGCATATCTCTGACCACAACATTTTTATCTACTCAGGAACACATAATTATATCTTACGTAGAGACCACCTTATTTAAAATTTTTTGTTTATTAATATTAAACACACAGCCAATAGTGCTAGTGAAAACAATCCGTATGTATTTTCTATGCAGCAGACATCACAACTCTCACACTTCAGAATACAAGATAGCACTCACTCTAGGGGACTTTAAATAGTGAAATCAGTAAAATCACAGAAATATGAACATTTTGGTACTAAATTGACTGAAAAAGGTATGACTGTGTACAGCATGAGGTAAGGCAGTGCTGTCTTGCTGGGAATGTGCTCGGCTGCTGGTCTGCCACCTTGCCAGCCTCATACCCTGCTTGCCTTTTCACACCTGCTTCTGGACTATGGCTTAGCTTTGCGTTAGGTCTCAGGTCAGGGTTACTTCCTAGGAGTGACCTTTCTAGAACGTTTGTGTTGTAATTCACCACCGTTCTGTATGATACCGTTTCCTGTTCTACTCTGCATTTATCTGGTATAACTGTGTGGTTGTCTTCTTTGTCCCCCTTTTCACTGCTATGTCCCCGGTGCTTAGTTCCAACGCTCTGGGTAGCAGATCTCTGGTCTGCGTAGAGGGCTGCAGGTCAGAAGCATTTCAGATAGGTTTAGATCGATTGGAGCGCCTTATAGCCCTCGACCCCCACCCCCGTGCTTATGTATAGCAGTAATAGTTTTATTAGCTTTCTTGCTCTCCACAGTTGGGCAGTACTTCATTTTTAACATTTGTATTATAGGTGATTATTAATTTAGTATGCGAAAGCATATCCCTATTAAGATCAGTAAGAGAACTGGAGGGAGGGCTCAGCAGCTAAGAATTTCCTGCTCGTGCTGAGGAACCTGATTTCGGTAAAGCATCCCCTTCTGGTCTCTGTGGCACCCGACATGAATATAGTGCATATATGCATGTGTAGACAGATATGCGTGCCAAATAAAGAAATCTGTCTGTCTAGTGTATCTATTTGAGACAGGGCTTCTCCATGTAGCCTTGGCTGTCCTGAAACTTACTGTAAACTAGGTTGGCTTTGAATCTACAATCTATCTACCTCCACTTTCTGAGTACTGGGATTAAAGGCATGTACCCACATATGGTCATATTTTTTTTTTAAAAGTAATCAGTAATGTTTTCTAAATATATTGAATTTTTGCCATAAGAATGTACCAGCCTATACAGAATGGTATACTCATACTCTGTATAGTATACTATACGGAATCTTTACTCATACTCCAGATTAAATGATTATCAAGATATTACTTTTTAAAGTGTATTGCTTCAGTTTTAGATGGAAAGGCATTTTTGCAAAATACCGTGATGCATATGACAAATGAGGCTGTTTGATTCTTTCATTGCAG
Seq C2 exon
CCAGGAAATCACCTGCCATAGAAGTTTCGCGTGCTCTGCTAGAGTGTCCTTGTGAGCATCGGGCTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-4930422G04Rik:NM_197997:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: