RnoINT0168990 @ rn6
Intron Retention
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231889943-231895483:+
Coord C1 exon
chr2:231889943-231891617
Coord A exon
chr2:231891618-231895409
Coord C2 exon
chr2:231895410-231895483
Length
3792 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TGTTTGTTCTTTCATTGCAGCCA
3' ss Score
10.03
Exon sequences
Seq C1 exon
GGTTTTCAAAGACCATATAAGATGCCAAAGAAAGTGGCTGTTACTGAAAACAGTGGACCAGCTGCCTCGCTTGGCGATGGGAACTCTGGCTTGCCTGGCCCAAGATTTCTTCCCACGTTCTCCAACACACTTCCTTTGTTTTCCACTGTTGGTCATAAAGATGTGACGACTACGTCAGCAGACAACGAGAGTCCTGTCACGTTCAGGAACACAGAGAGAAGTGACATGTCTCTATCATCTCTTTCTTCATCCTTCACGATTAACACAGACACACTAGGTAAAGAGGACAAACTTTGCTTTCCTGTAAGTTCTGAAACCAAATATTCAGACTCTTTATTGGCCAGTGAACCCATGAGAAGAAATGGCTTGGACTCTTTCTGTCCTGGAGTTTCACAAACCATCAGAAGCAAAGCCCAGATATTAGCTCTTCTGAAGTCCAGCTCAACTACCAGGAAGGATCTGCCTGATGAGAGTACAGGACACGTTCCTAAGATACAACCACATGGCTGTTTGAAGATTACTTCTAAGCCAAAGGAAGACTGTGCTGAAACACAGAGCACAGGGAATTTACACTGTGAGCAGCAGTCAGAAAATCCTACAAGAAGTACAAGCCGGTGGGCCAGGTATTTACCCTCCCAGAGGTCATCTCCCTGTTCTGCTAGAGATGAAAATGATACACAGGACAAACCGGAAGCCCAAGAAGATGTGAACATTTTTAACTTGTCTGAACTTTTGGTACAACAAAAGTCAGAGCTCTTTGAAACATGTATTGAAAAGGGAGAATTATACAGTGAGGACAAACCGATAGATGATTGCCAGTCCTGGAGTCCGGAAGAAAGCTTAGCACCTTCATTCTGTAAGAACAGCAGCGTATGGGTTAGCTGCAGCAGTAAAGAAAGTGTCGACTTATTGTCAGAATCTGACACTCAGTACAGTAGCAAAGTGCCTTTTAATCAAAATGAGAAGGTGTGTATACAAGGGTCACTTTCCACTCAAGGTATTCAGGGGGCAGATGCAGATACATTGGAACCGGAGTATAGACCACTGTCACCACTGTCAGAAATAGAACATAAACAAATTGAAGTTGAGTCTTCTCTAAGTACCAGCTCTAGAATCTCTGATGACATTGTAGACATGGTTTCTAAAAGCAGTGCTGAGAGAGAAAATCTGGATACTGTTCAGAAAGCTGCACAGCCATTCTTGGAAGTTTCTTTTAATCTGAGCAACTTTGAGGCCAGTGACACTGATGAGATGTCACAAGAAGACAGCAGACTTTCCCAGGATTCAGAGAGGTGGGAGAAGGAGGTTGTGCTTATAGATGATTCCTGTGTTCAGAAGAGCTCTGGGGATATAGGCTGCCGAGAAATTGCAGGAAAGCACTTGCCACTCCTGTCGTCTGCCGATGGCAAGCCTAAAGAGGCCCTCACTGCTACTGTGACTCTGTTGTCAGAATTCTGTGATAGAACCTGTGTAGGTTTTAATTCAGGACCCCATGAAGATGCAAACACTGGCAAAGCACTAGAGGGGCAGTGCTACGGAGACACAGGGAGCAGTTTGGACTCGTCTCTGGGGTGGAGTGAGGAAGTGCCAGGGGACAGCAAAGAAGATGCTAGTGAATCTATCCAAGGAAATGCAATTAATTATGGTAGTGTTTCACCCTCAAATAAACTGGAAG
Seq A exon
GTATAAATACAAGCTTACATATTCCTTACCTTTTAAACACAATTGCTAATCCAACTCCTGAAAACAGCGACCTGATCTCAGAAGGTACTCCTCCTTCTGTTTTGCAAAGTCACATAGACAGAAATGACGAGTGGGTCTTATCACCAATCTCTAGCAGTGACATTAGTGGCCAGCTCTTGAGTACCACTCAGGATCACTCTGAGCATCATGAACTAGATGAATTCAACACTCAAGTTTCTAGTTCTTTATTTTACCCTGTGGGAATAAAACATCCTATTTACAGAGACAGTGAAGAAGATATTTCTGAGTCCAAAGAATTAGGAAGGATTAGAAGTTTGTCGTGCAATCATTTTAAAGTGGAAACTACACAGAGAAATGAGCAATCCTGGGCTACTTATAAAAATTCTTCAGAACTTTTAGAAGTAATAAATAACATATCCTTTTTAAAGTCACGGCCTGAGCATGGCACAGCTTTAGAAAACTTGGCAGTAGTGAAAGAAAAGCATGTCTTTCCGCATGAAGTTCAGCACAGTCGAGGCCCAGATGTCAGTCCTAAAGGTTAGAGTCACTTGGTTGTTCCCTTTGTAGCTCAAAGGAAGGGAAGACTCCTGCTGTCTGCTGTACAGAGATTTACATATGTGGTGGGTTATGCCTGTGACCTCAGCACTTTGGAAGTATTAGAATTCAAAATTAACTGCACCTCTCCTTAGTTTCAGTCCAACCTGGGTATGTGAGACCCTCCCTTCAATAAATGGGGCTGGAGATTACATGGTGTAATGACAACTCTAATAGAGGATTATAGAGTGAAGACTAATTAAGTCTTCCTATCATCATTCCTCAGTCTACTTAACATTAACCAGTCTCTACAGCATCTTTCCTGAAATGCCCTGTGCATGTGCAGAACACAGATTGACAGGTATAAGCAAGGATATGTTCAGTTTAAGCATACTAATCAAAACTGTAGTGCTTTCCCTTCACATGACTACATCTCCATCCTGAGTGGTACAAGAGTGCCTTCTGCTCCATTCTGTAATATTTCTTTATTCTCAGTGTGAAAGGGCCCTGACTCAACATGTCAGTATATTTTACTCCTAAAATCTCACAGTGCATAACAGATCATTGCCAAATTATCACAGCAATGCTACTGCCCACCAAGATTTATCAACTTTGTAAAGTTCCCAAGTCCTTCCTAAGTCACTTTAGTAAATGAAATTGAGCCTCTCTTAGATTTTATAACTCTGCCATTTCCATGATTTCATGAACTCGTCAACTATTTCTCTATTTTTTTTTCTTTCTTTTTTTCGGAGCTGAGGACCAAACCCAGGGCCTTGCGCTTTCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACCCCTGTTTCTCTATTTTTAAAATGGGTGTTGGTCTTTTTATTCTTGACTTATAATCATTTTCTTATGTATTGATAATATTAATCCTTTATGATATCTGCTGCATATGTCTGTTTATTTTTTAACATAAGTTTTCTCTGTGTAGCCTGGGCTATTCTAGAACTTGCTCTGTAGACCAGGCTGGCTTAAAATCAGAGATCTGACTGCCTCTGCCTCCTACGTACTGGGATTAAAGGTGTGTGTGTGTGCCACAGCCTGGAGAGTTGGCTCAGTTGGTCAGAGCATTTGTTGTTGCAAAGGACCTGGGTTCAATTCTTAGCACACATAGAGAGGGGCTCATCACCTCCTGTCGCACCAGCATGTTTGGTGCACAGACACACAAGGCAAAACACTCATATACATAAAATAATAAAAAAGTTATGTACCTCTGCCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTGAGGCAGCATCTTACTCTATGGCTGTGTACCCTATAGCATGGTTCCTACTGATCTGTAGTATATGAAAGTAAATGAACAACACTGTGATAATCCATTGTTAGGATTAAATTCTTACTTGAATATCTCAAGTCATTTTTGCTAAAAGTATGAGTAAATTCCTATACATTCTAAAATTCTTTGAAATGTGATTAAGTTTTTTTAAAGATTTATTTATTTAGTATATATCTGTGTGTACACTTGTACACCAGAAGAGGGCATCAGATCTCATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAGTTGAACTCGGGACCTCTGGAAGAGTAGCTGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAGGAGTTTGTTTTCTAAAAAAATGAAATGAAAATCCTAATAATAAAAATGAATGGATGTAACTGGTTCATAAACCAAAATAAGTACATAAAATTATAATATGAAGATTTGGAAAATACAGCATTTTGTTTTGAGAAAATGATTCATCAAATTGGAGGGGAAAGTACAGTAGCTGCACAGTGCTGAGATCTTTATGTTCTGTGATGAGCTCAGCACCAACTGTAGAATCATGGGTCACATGAGACATGCAACACTGACTTCTTGCACATTTTCATTTGCGCAGCAGCACATAATTATGCCCTTCAAATTTTTTAGTCTATTAACATTGAGCTCACAGTCAATGGTGCTGATGAAAACGATCCCTATGTGTTTTCTCTGTAGCAGACATCACAACTCTCACACTTAAGAATACAAGATAGCACTAACGCTAGGGGACTTTAAATAGTGAAATCATCATTAAAATCAAAATACGAACATTTTGGTACTAAATTGAAAAGGTATGACTATGTACAGCATGCAGTAAGGCCGAGTGTTGTCTGTCTTGTTGGGAATGTGCTCCGCTGCTGGTCTGCCATCTTGTCAGCCTCATACCCTGCTTGCTTTTAGTTATGCATTAGGTCTCAGTTCAGGGTTACTTCCTACGAGTGACCTTTCTAGAACTCCTGTATTGCATTTCATCACCTTCCTGTACGATACCTTTTCCTAATGTACTCTGAGTTTATCTGGTGTAATTGTGTGGTTGTCTTCTTTGTCTCTCCCTTTTCACTGCTCTGTCCCCAGTGATTAATTCCAATACTCTGGGCAGGACATCTTTGGTTTACATAGTGTGTTGTAGGTCAGATGGATTTAAGATAGGTTTGGATAGACTCTGGCTCCTCGTACTCCCCTATGGCGATAGTGTAGAATGAGTTTTTATTAGCTTTCTTGTTCTCAACCATTGGGCATTGCTTCATTTTTGACATTTGTATTATAGGTGATTATTGGTTTAAAATATATATTTTTAAAATAGCTTGCTAAAAAATCAAAAACATATCCCAATTAAGGCAATAGTGACCAGTGAGGGAACTGAACTTACTGCTTATGCAGAGGATCCAGATTTGGGTCCAAGAATCCCCTTCTTGCCTTTGTAGGCGCCCAACATACACATAGTGCATATATGTGTGTGTAGACAAATATTCATGAAAAATAAATCTGTCTAGTGTGTCTACTTGAGACAGGGTCTCACCATGTAGCCCTGGCTGTTGTGGAACTCACTGTTAACTAGGCTGGCCTTGAATCTATAATCTACCTCCGATTTCTGAGTACTGGGATTAAAGGCATGCACCCAAACATGGTCTTAATGTTATTTTAAAAAAGAAACCAGTAATTTTTAAATTTTAAATATATTGAATTTTTGCCTTAAGAATGTACGTGTCTATACAGAATAGTACACCAAAGCTTTACTCCTGCTCCAGATTAAATGATTATAAGACATTACTTTTTAAAGTATATTACTTCAGTTTTAGAAGGAAATGTATTATTGCAAAATACTATGATGCATATGATAAGTAAGGCTGTTTGTTCTTTCATTGCAG
Seq C2 exon
CCAGGAGATCACCTGCCACAGTAGTGTCACATGCCCTGCTAGACTGTCCTCACGAGCATCGGGCATCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980:ENSRNOT00000014695:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]