MmuALTD0000764-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120318752-120319491:+
Coord C1 exon
chr7:120318752-120318922
Coord A exon
NA
Coord C2 exon
chr7:120319301-120319491
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
AATTTTGCTAATTTTTCTAGTAT
3' ss Score
4.48
Exon sequences
Seq C1 exon
TGGAGGAAACAAACGTAGGCTGAGCACTGCCATTGCCATAATGGGAAACTCTACAGTTGTCTTCCTAGATGAGCCATCCACTGGCATGGACCCACTAGCCCGGCGCATGCTCTGGAACGCAGTGATAAAGACAAGGGAGAGTGGCAAGGTCATCATCATAACCTCTCACAG
Seq A exon
NA
Seq C2 exon
TATGGAGGAGTGTGAAGCTCTCTGTACCAGGCTAGCCATCATGGTGCAGGGGAAGTTTGTGTGCCTGGGAAGCCCTCAGCATCTCAAGAACAAATTTGGCAATATTTACACCATGACCATCAAGTTCAAAACTGACACCGATGACAACACGGTACAAGATTTAAAAGATTTTATTGCCGAAGTTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-47-37,48-37,49-37-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAGAGTGGCAAGGTCAT
R:
ACAAACTTCCCCTGCACCATG
Band lengths:
99-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types