RnoALTD0001199-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000043296 | Abca14
Description
ATP-binding cassette, subfamily A (ABC1), member 14 [Source:RGD Symbol;Acc:1561491]
Coordinates
chr1:190063418-190064150:+
Coord C1 exon
chr1:190063418-190063588
Coord A exon
NA
Coord C2 exon
chr1:190063960-190064150
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GTTTGTTGTGTCTTTTCTAGCAT
3' ss Score
9.98
Exon sequences
Seq C1 exon
TGGAGGAAACAAACGTAGGCTGAGCACCGCGATTGCCATAATGGGAAACTCCTCAGTTGTCTTCCTAGATGAGCCGTCTACTGGCATGGACCCACTAGCCCGGCGCATGCTCTGGAACGCAGTGATAAGGACGAGAGAGAGTGGCAAGGTCATCATCATCACCTCTCACAG
Seq A exon
NA
Seq C2 exon
CATGGAAGAATGTGAAGCGCTCTGTACCAGGCTAGCCATCATGGTGCAGGGAAAGCTGGTGTGCCTGGGCAGCCCTCAGCATCTCAAGAACAAATTTGGCAATATTTACACCATGAACATCAAGTTCAAAACTGGCACCGATGACGACGTGGTGCAGGATTTAAAAAATTACATCGCCGAGGTTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043296-39-39,40-39-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACGAGAGAGAGTGGCAA
R:
AGCTTTCCCTGCACCATGATG
Band lengths:
102-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]