MmuALTD0000767-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25441875-25442397:+
Coord C1 exon
chr2:25441875-25442054
Coord A exon
chr2:25442055-25442111
Coord C2 exon
chr2:25442191-25442397
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAA
5' ss Score
0.93
3' ss Seq
ACCTCTGCCTCTCTGCACAGAGG
3' ss Score
10.06
Exon sequences
Seq C1 exon
ATGTGAAGGAGTCCCGGAAGGATGTGCTGCCTGGGGCAGAGGGCCTGACAGCTGTGGGGGGTCAAGCTGGCAACCTGGCTCGGTGCTCAGAGCTGGCACAGTCACAGGCATCGCTGCAGTCTGCATCCTCTGTGGGCTCTGCCCGTGGGGAGGAGGGCACCGGCTACTCTGATGGCTACG
Seq A exon
GTGACTACCGTCCCCTCTTTGACAACTTGCAGGACCCAGACAATGTCAGCTTACAAG
Seq C2 exon
AGGCAGAGATGGAGGCCCTGGCTCAGGTGGGCCAGGGCAGCCGCAAACTCGAGGGCTGGTGGCTGAAGATGCGGCAGTTCCATGGGCTCCTGGTGAAGCGCTTCCACTGTGCTCGTCGGAACTCCAAAGCTCTCTGCTCTCAGATTCTGCTGCCTGCCTTCTTTGTCTGTGTGGCCATGACTGTGGCGTTGTCTGTCCCTGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-49-62,50-62,51-62-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTGCATCCTCTGTGG
R:
ATGGAACTGCCGCATCTTCAG
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types