RnoALTD0001214-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2662215-2662727:+
Coord C1 exon
chr3:2662215-2662386
Coord A exon
chr3:2662387-2662443
Coord C2 exon
chr3:2662521-2662727
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAA
5' ss Score
0.93
3' ss Seq
TCACCCCCGCCTCTCTGCAGAGG
3' ss Score
9.3
Exon sequences
Seq C1 exon
GAGTCCCGGAAGGATGCACTGCCTGGGGCAGAGGGCCTGACGGCTGTGGAGAGTCAAGCAGGCAACCTGGCTCGGTGCTCAGAGCTGGCACAGTCCCAGGCTTCACTGCAGTCTGCATCTTCTGTGGGCTCCGCCCGTGGGGATGAGGGTGCTGGCTACACCGACGGCTACG
Seq A exon
GTGACTACCGTCCCCTCTTTGACAACTTGCAGGACCCAGACAGTGTCAGCTTACAAG
Seq C2 exon
AGGCTGAAATGGAGGCCCTGGCTCGGGTAGGCGAGGGCAGCCGCAAGCTAGAGGGCTGGTGGCTGAAGATGCGGCAGTTCCATGGGCTCCTGGTGAAGCGCTTCCACTGTGCTCGCCGGAACTCCAAAGCGCTCTGCTCCCAGATTCTGCTGCCTGCCTTCTTCGTCTGTGTGGCCATGACTGTGGCATTGTCTGTCCCTGAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268-40-48,41-48,42-48-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCATCTTCTGTGGGCTC
R:
ATGGAACTGCCGCATCTTCAG
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]