MmuALTD0000771-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110293787-110296637:-
Coord C1 exon
chr11:110296468-110296637
Coord A exon
chr11:110296452-110296467
Coord C2 exon
chr11:110293787-110293914
Length
16 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TTCTTATTCTCTAATTCCAGACT
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTTGCTTCTGCTTTTAATTTTTTTTGCAGTTCAGATTTTTATGTTTTTTCTCCATCATTCTTTTAAAAATGCTGTGGTTCCCATCAAACTCGTTCCAGACTTGTATTTCCTAAAGCCTGGAGATAAACCTCATAAATACAAAACAAGCCTGCTGCTTCAAAATTCTACTG
Seq A exon
GTGAGAGTGTGTGAAG
Seq C2 exon
ACTCAGATATCAATGGTCTTATTGAGTTTTTTGCACACCAGAACATAATGGTGGCAATGTTTAATGACAGTGACTATGTGTCTGCTGCTCCTCACAGTGCGGCTCTCAATGTGGTGCGTTCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-31-29,32-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCTGCTTCAAAATTCTACTG
R:
TGAGGAGCAGCAGACACATAGT
Band lengths:
118-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types