MmuALTD0000909-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78703486-78705391:+
Coord C1 exon
chr1:78703486-78703584
Coord A exon
chr1:78703585-78703600
Coord C2 exon
chr1:78705234-78705391
Length
16 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTATCCTTTGTGTGTTTCAGCTA
3' ss Score
10.77
Exon sequences
Seq C1 exon
ACCGTAAAAAGGACCTTGTGAAACTACAGGCAGGAGAGTACGTTTCTCTCGGGAAAGTAGAGGCAGCTTTGAAGAACCTCCCACTGATAGATAACATTT
Seq A exon
GTGCGTATGCAAACAG
Seq C2 exon
CTACCATTCTTACGTAATTGGGTTTGTTGTGCCAAATCAAAAGGAACTTACAGAGCTAGCTAGAACAAAAGGATTTAAAGGAACTTGGGAAGAGCTGTGTAACAGCAGCGAGATGGAAAATGAGGTCCTTAAAGTGCTTTCTGAAGCTGCTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883-41-34,42-34,43-34-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(2.1=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
A:
NA
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAGGCAGGAGAGTACGT
R:
GGCACAACAAACCCAATTACGT
Band lengths:
110-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types