MmuALTD0000909-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78703486-78705391:+
Coord C1 exon
chr1:78703486-78703584
Coord A exon
chr1:78703585-78703786
Coord C2 exon
chr1:78705234-78705391
Length
202 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTATCCTTTGTGTGTTTCAGCTA
3' ss Score
10.77
Exon sequences
Seq C1 exon
ACCGTAAAAAGGACCTTGTGAAACTACAGGCAGGAGAGTACGTTTCTCTCGGGAAAGTAGAGGCAGCTTTGAAGAACCTCCCACTGATAGATAACATTT
Seq A exon
GTGCGTATGCAAACAGGTGAGCTCCTGGAGTCTGGGCTGCGGTCTAGAAGTTGGCAGGTGTGCCGTGAGCAGTTGCAGCCGTGTGCTGCGGTATAAAAGTTGGTGGGTGTGCTGGGTGTGCCGTGAGCAGTCGAAGCCCCTGTGGGGCCACCACCTCCTCTGCATAGCTAGTGAGCCGGAACTTCCTGGGATGCTCTCCTCT
Seq C2 exon
CTACCATTCTTACGTAATTGGGTTTGTTGTGCCAAATCAAAAGGAACTTACAGAGCTAGCTAGAACAAAAGGATTTAAAGGAACTTGGGAAGAGCTGTGTAACAGCAGCGAGATGGAAAATGAGGTCCTTAAAGTGCTTTCTGAAGCTGCTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883-41-34,42-34,43-34-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(2.1=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
A:
NA
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTAAAAAGGACCTTGTGA
R:
TTCAGAAAGCACTTTAAGGACCTCA
Band lengths:
244-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types