MmuALTD0001333-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118539847-118540549:-
Coord C1 exon
chr6:118540476-118540549
Coord A exon
chr6:118540436-118540475
Coord C2 exon
chr6:118539847-118539875
Length
40 bp
Sequences
Splice sites
5' ss Seq
ATGGTATTT
5' ss Score
3.85
3' ss Seq
ATTTTCCTTTTGCTTTTCAGAGG
3' ss Score
10.25
Exon sequences
Seq C1 exon
ATGTGACTTATATACCTTCTTGCATGAGTGGATCAAGAAGCTTTAAAATGGCTAAACTAGAGGAGTCAAGAAAT
Seq A exon
GTAGGCCTTCCGGTAGCCCACATGGGTATGGAAAAAAATG
Seq C2 exon
AGGCCCCCAGGAAATATGCAATCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-15-19,16-19,17-19-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTTATATACCTTCTTGCATGA
R:
TCCATGATTGCATATTTCCTGGGG
Band lengths:
101-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types