RnoALTD0002763-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150589688-150590390:-
Coord C1 exon
chr4:150590292-150590390
Coord A exon
chr4:150590280-150590291
Coord C2 exon
chr4:150589688-150589716
Length
12 bp
Sequences
Splice sites
5' ss Seq
ATGGTATTT
5' ss Score
3.85
3' ss Seq
ACATTCCTTTTGCTTTACAGAGG
3' ss Score
9.04
Exon sequences
Seq C1 exon
ATGTGACTTATATACCTTCCTGCATGAGCGGATCAAGAAGCTTTAAGATGGCTAAGCTAGAGGAGTCCAGAACTGTAGGCATTCCAGTAGCCCACATGG
Seq A exon
GTATGGAAAATG
Seq C2 exon
AGGCCCCCAGGAGGTGTCCAATCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-19-17,20-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAGCGGATCAAGAAGCT
R:
ATGATTGGACACCTCCTGGGG
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]