MmuALTD0001857-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000006057 | Atp5g1
Description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9) [Source:MGI Symbol;Acc:MGI:107653]
Coordinates
chr11:95935276-95936075:-
Coord C1 exon
chr11:95935939-95936075
Coord A exon
NA
Coord C2 exon
chr11:95935276-95935353
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAA
5' ss Score
0.93
3' ss Seq
ATATCTTTCTGACTTTACAGATT
3' ss Score
10.14
Exon sequences
Seq C1 exon
TCCTGGGTTGGCTGTAGCCAGACAGCCGGAAAACAGTTTTTCTCAACCTCGGCTGCGTGTTCAGTTCATCTGGAAAGCCTAATGCTTCTACTGCCCAGACTGCTCCTCAGACCAATTGCATCAGACTGAGAATGAAG
Seq A exon
NA
Seq C2 exon
ATTCGCTCCTGTACCAGGGGTCTAATCAGGCCTGTGTCTGCCTCCCTCCTGAGCAGACCAGAGGCCCCATCTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006057-5-4,6-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.038
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTCCTCAGACCAATTGC
R:
TTAGATGGGGCCTCTGGTCTG
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: