MmuALTA0002324-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006057 | Atp5g1
Description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9) [Source:MGI Symbol;Acc:MGI:107653]
Coordinates
chr11:95934837-95936347:-
Coord C1 exon
chr11:95936301-95936347
Coord A exon
chr11:95934989-95935015
Coord C2 exon
chr11:95934837-95934988
Length
27 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CCTCCCTCCCTTCCTTCCAGCCT
3' ss Score
10.32
Exon sequences
Seq C1 exon
ATTGAAAAATGCAGACCACCAAGGCACTGCTCATTTCTCCAGCTCTG
Seq A exon
CCTTCCTGCAGCAGCTCCCCTCTCCAG
Seq C2 exon
GTGGCCCGACGGGAATTCCAGACCAGTGTCATTTCCCGGGACATCGACACAGCAGCCAAGTTCATTGGTGCTGGGGCCGCCACAGTTGGTGTGGCTGGATCAGGAGCTGGCATTGGCACAGTGTTTGGTAGCTTGATTATTGGCTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006057-4-8,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013716=ATP-synt_C=PU(46.4=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCTCATTTCTCCAGCT
R:
CTGATCCAGCCACACCAACTG
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: