HsaALTA0000808-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000159199 | ATP5G1
Description
ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:HGNC:841]
Coordinates
chr17:48894372-48895334:+
Coord C1 exon
chr17:48894372-48894449
Coord A exon
chr17:48895156-48895182
Coord C2 exon
chr17:48895183-48895334
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGCCTTGCTTCTCTTTCTAGCCT
3' ss Score
9.67
Exon sequences
Seq C1 exon
ATCCGCTGTTGTACCAGGGGTCTAATCAGGCCTGTGTCTGCCTCCTTCTTGAATAGCCCAGTGAATTCATCTAAACAG
Seq A exon
CCTTCCTACAGCAACTTCCCACTCCAG
Seq C2 exon
GTGGCCAGACGGGAGTTCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCAGCCAAGTTTATTGGTGCTGGGGCAGCCACAGTTGGTGTGGCTGGTTCAGGGGCTGGCATTGGAACCGTGTTTGGCAGCTTGATCATTGGCTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159199-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013716=ATP-synt_C=PU(46.4=62.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGTCTAATCAGGCCTGT
R:
GTCAATGTCCCGGGAGACAAC
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development