BtaALTA0003896-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018339 | ATP5G1
Description
Bos taurus ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) (ATP5G1), mRNA. [Source:RefSeq mRNA;Acc:NM_176649]
Coordinates
chr19:38254076-38254709:-
Coord C1 exon
chr19:38254632-38254709
Coord A exon
chr19:38254241-38254254
Coord C2 exon
chr19:38254076-38254240
Length
14 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCTGTTCCCCCTCCTTCTAGCCT
3' ss Score
10.44
Exon sequences
Seq C1 exon
ATCCGTTCTTGTACCAGGGGTCTGATCAGGCCTGTGTCTGCCTCCTTCCTGAGTAGGCCAGAGATCCAATCTGTACAG
Seq A exon
CCTTCCTACAGCAG
Seq C2 exon
TGGCCCACTGCAGGTGGCCCGGCGGGAATTCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCGGCCAAGTTTATTGGCGCTGGGGCTGCCACAGTTGGTGTGGCGGGTTCAGGGGCTGGTATTGGAACAGTGTTTGGCAGCTTGATCATTGGCTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018339-5-8,5-7,5-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013716=ATP-synt_C=PU(46.4=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTTCCTGAGTAGGCCAG
R:
GTCAATGTCCCGGGAGACAAC
Band lengths:
99-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development