RnoALTA0005173-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007235 | Atp5mc1
Description
ATP synthase membrane subunit c locus 1 [Source:RGD Symbol;Acc:61933]
Coordinates
chr10:83896433-83896851:-
Coord C1 exon
chr10:83896694-83896851
Coord A exon
chr10:83896585-83896611
Coord C2 exon
chr10:83896433-83896584
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACTGCCTCCCTTTCTTCTAGCCT
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAATTAAAAGGATCTACGACACCCCATCTAACTCCAAGACTCAGATGACAGTCATAGATGTGACTAGCCCTGTCTGAGAACACTCTGGGACTGACATTCTCCCTGCACGCAGAGCACTCTGCCCTTTGAGGCTGTGTGCCAGCTGCTTCTTAGCTCAG
Seq A exon
CCTTCCTGCTGCAGCTCCCCTCTCCAG
Seq C2 exon
GTGGCCAGACGGGAATTCCAGACCAGTGTTATTTCCCGGGACATTGACACAGCAGCCAAGTTTATTGGTGCTGGGGCCGCCACAGTTGGTGTGGCTGGATCAGGGGCTGGCATTGGCACAGTGTTTGGTAGCTTGATTATTGGCTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007235-14-10,14-9,14-8-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0013716=ATP-synt_C=PU(46.4=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGACATTCTCCCTGCACG
R:
CTGTGTCAATGTCCCGGGAAA
Band lengths:
122-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]