DreALTA0005678-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056008 | atp5g1
Description
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:ZFIN;Acc:ZDB-GENE-040426-1966]
Coordinates
chr3:23469148-23471462:-
Coord C1 exon
chr3:23471388-23471462
Coord A exon
chr3:23469274-23469331
Coord C2 exon
chr3:23469148-23469273
Length
58 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
CTTTTTTTCTCTTCAGGCAGCTC
3' ss Score
4.39
Exon sequences
Seq C1 exon
ATCCGTGGTGGATCCAGGGCTTTGGCACGGCCCATTTCAGTGGTGTTCAGCAGACCTGAAGCAAGATCTGAACAG
Seq A exon
CTCTATTGCCAGTCAGTGAAGCAGCCCTTCTTAATTTAACTCGGGGCTTCCAGACCAG
Seq C2 exon
CGTTGCATCCAGGGATATCGACACAGCAGCCAAATTCATTGGCGCTGGTGCTGCCACAGTCGGTGTGGCCGGATCTGGAGCTGGAATCGGGACAGTGTTCGGCAGCCTCATTATTGGCTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056008-3-5,3-4,3-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013716=ATP-synt_C=PU(46.4=50.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCATTTCAGTGGTGTTCA
R:
CGAACACTGTCCCGATTCCAG
Band lengths:
148-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]