MmuALTD0002071-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000045942 | BC049762
Description
cDNA sequence BC049762 [Source:MGI Symbol;Acc:MGI:3039622]
Coordinates
chr11:51254359-51262835:-
Coord C1 exon
chr11:51262777-51262835
Coord A exon
NA
Coord C2 exon
chr11:51254359-51254664
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
CAGCCCTCCATCCTTTGCAGGTT
3' ss Score
9.2
Exon sequences
Seq C1 exon
CTTAAAGTGGGAAGCTCATCGCACTCCATCTACCAGTCGCCCCTCAACCTCAGCTCCAG
Seq A exon
NA
Seq C2 exon
GTTCTACCGGAAGCTCATGGACTGACTCTGAGATCAGGGTCTTCCTGCTGGAGTGGGAAGTAGTTGAACAGGAAATGGGCCACCCGGGCAGGAAGATCCACAAGAAGACCAGGGCTCTTTGCAGGCGCCTTTACCAGCAGGGCCTGAAGAAGAGCTGGGAAAGCTGTTTCGACCTACTGCTGAGCCTGCGAGATCTGCACAGGACTCTCTGTAATGAAAGACCAGGGATTGAACCCTTGTTTTCTCCTTATGCTGAGGCCCTGTACAGGATCCTGGGCTCCAGTCCCCAGGGAAGCCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045942-2-6,3-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTCATCGCACTCCATC
R:
AGAGTCCTGTGCAGATCTCGC
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types