MmuEX1004977 @ mm10
Exon Skipping
Gene
ENSMUSG00000045942 | BC049762
Description
cDNA sequence BC049762 [Source:MGI Symbol;Acc:MGI:3039622]
Coordinates
chr11:51254359-51264017:-
Coord C1 exon
chr11:51263595-51264017
Coord A exon
chr11:51262777-51262943
Coord C2 exon
chr11:51254359-51254664
Length
167 bp
Sequences
Splice sites
3' ss Seq
GAGGTTCTTTCTGTTCTTAGGTG
3' ss Score
9.71
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
TGACAATCGGTCCACTGGTTTAGAGGGTTGGCTACTTGAGCAACAGAGCTGTCACAATGTAAATGCAATGTTCGCTCTCTAATTCCATCACTCAGCTCTCTAATCCCATCACTCAGGAGGCAGAGGCAGGAGAATCTCCTGAGTTCGAGTCCTGCCTGGCCTACATAATGCCTGGGCAATCGGGGCGACCCAGATCTAGGGGGGGCTTGGGGTGGGGTGACCGCCTGGCATGAAGGACGAACCTTCCTTCCCAAGTGTGATCCTCGAAGCTGGAGGTGAACTCCAGCCGCTGCCTGGCTCGCCGCAGCGCCTGCCCTACCTCTTCCGGGCAGCTGGCCAGGGCCCTTAGAGCTGAACAACAGAGCGAATAGCGGACTTTGGAAAAGGCTCCGGTTATGCAAACGGCCGAGGCCACAGACAGGG
Seq A exon
GTGAACCTGGAAGCCCGCCTTAAGTCTGCGGCGCGCGTCGGGCTCTCGAAGAGTTTTGCTGGGCGTGGCCACGCTGGGTAGGGCCAACCTCTGACCTTTTCCCATCAGCTTAAAGTGGGAAGCTCATCGCACTCCATCTACCAGTCGCCCCTCAACCTCAGCTCCAG
Seq C2 exon
GTTCTACCGGAAGCTCATGGACTGACTCTGAGATCAGGGTCTTCCTGCTGGAGTGGGAAGTAGTTGAACAGGAAATGGGCCACCCGGGCAGGAAGATCCACAAGAAGACCAGGGCTCTTTGCAGGCGCCTTTACCAGCAGGGCCTGAAGAAGAGCTGGGAAAGCTGTTTCGACCTACTGCTGAGCCTGCGAGATCTGCACAGGACTCTCTGTAATGAAAGACCAGGGATTGAACCCTTGTTTTCTCCTTATGCTGAGGCCCTGTACAGGATCCTGGGCTCCAGTCCCCAGGGAAGCCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045942_MULTIEX1-2/4=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGTGTGATCCTCGAAGC
R:
GGTGGCCCATTTCCTGTTCAA
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types