MmuALTD0002417-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000070686 | C87414
Description
expressed sequence C87414 [Source:MGI Symbol;Acc:MGI:2141341]
Coordinates
chr5:94097553-94098906:-
Coord C1 exon
chr5:94098806-94098906
Coord A exon
NA
Coord C2 exon
chr5:94097553-94097625
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTCTGCCTAATGTTTTGCAGTGG
3' ss Score
7.64
Exon sequences
Seq C1 exon
TCAGAATACAAAGAAGCTGTATTCCAAAGTTGGCAGCTGAACTTGTTAGTGAAAGAATCACCCAGGTGGTGCTGGTTATGAAGTTACTAAGGGGAGAACAG
Seq A exon
NA
Seq C2 exon
TGGGTCTCTGCATCTGTTTCCATCAGCTGCTGTGTGAAGCCTCTCAGATGACATGTATGCTAGGCTCCCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070686-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACAAAGAAGCTGTATTCCAAAGT
R:
CGACGGGAGCCTAGCATACAT
Band lengths:
170-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: