MmuEX0008637 @ mm9
Exon Skipping
Gene
ENSMUSG00000070686 | C87414
Description
expressed sequence C87414 [Source:MGI Symbol;Acc:MGI:2141341]
Coordinates
chr5:94067666-94100577:-
Coord C1 exon
chr5:94100362-94100577
Coord A exon
chr5:94094426-94094439
Coord C2 exon
chr5:94067666-94067959
Length
14 bp
Sequences
Splice sites
3' ss Seq
CTTGCATCCGTGGGATGAAGCCT
3' ss Score
-1.26
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTTACTGCGATTTTTTTAACTAGAGGTGGGGCTCTCTGAGATTTACCCCTTCCCATCGAATCAAATTGTAGCTTGTGGGTGGATCTGGGGTGGCAAAGAGGAGGAGTAAGGAAGAAGGTGGCTTTTTGTTCCAGAGGAGTAAGGGAAACTTTCAGAGTTGTAGAACCTAAAACTTCAGCCTGTCCTTGCTTGAACTAGGAACAGTGTCACCAGAG
Seq A exon
CCTACTTGATTAAG
Seq C2 exon
GAGCCTTTACTGAAGACCTGAGAGGATGAGTGGTCAGACCCCACCCACACACACTCTGCTGACACATGAAGCTTTGATCATGTCCTCTCTGGAGGAGTTGCCTACTGTGGTCTTCCCAGCACTATTCAAAGAGGCCTTTGCTGGCAGACACACCAATCTCCTAAAGGCAATGGTGGCAGCCTGGCCTTTCCCCTGTCTCCCTGTGGGGCCATTGATGAAGAAGCCTAACCTAGAAACCTTGCAAGCCCTGCTAGATGGAATAGACATGCGACTGACAAGAGAGTTTCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070686_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.078
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGTCCTTGCTTGAACT
R:
TGTGTCAGCAGAGTGTGTGTG
Band lengths:
106-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types