MmuALTD0002432-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32528276-32528894:+
Coord C1 exon
chr17:32528276-32528319
Coord A exon
chr17:32528320-32528358
Coord C2 exon
chr17:32528717-32528894
Length
39 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
ACCAACCTGTCCTCCCGCAGGAA
3' ss Score
11.73
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACCCACAGAAGAG
Seq A exon
GTCTCCTCTGGCTTTTATTCCCTTTTCTGCTGGGCCTAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCCATGAGGGAGATGAAGGTGGCACTGGCGCTGACTCTGCTGCGCTTCCGCGTCCTGCCAGGTGACAAGGAGCCTCGCCGGAAGCCAGAGCTGATCCTGCGCGCAGAGGGCGGGCTGTGGCTGCGGGTGGAGCCTCTGAGCAAGGGCACTCAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586-28-22,29-22,30-22-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGCTTCGACCCAGAAAA
R:
CTCCTTGTCACCTGGCAGGA
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types