MmuINT0045408 @ mm10
Intron Retention
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32528276-32528894:+
Coord C1 exon
chr17:32528276-32528358
Coord A exon
chr17:32528359-32528716
Coord C2 exon
chr17:32528717-32528894
Length
358 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
ACCAACCTGTCCTCCCGCAGGAA
3' ss Score
11.73
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACCCACAGAAGAGGTCTCCTCTGGCTTTTATTCCCTTTTCTGCTGGGCCTAG
Seq A exon
GTGAGGTGAGAGGGCTTGCGGTGACTGAGGGGCTGACAGCTGGGACAGGGGAAGTTGGTATGGTCAGGTTCTGGGACTCCTTCCTGCCCTCTACTCAGGGTATGTGCAAAGATCTAGAAATCCCGGGGTGGAAAGTGAAAGGTGGGGGCCCTGTGCTCAGAGCCCTGTCCCGATCTGTCTTGGGCGCTGAGTCTGAGAGAGCTTTGGGAGTGGCAACACAACACTTGGCGTCCCAGGAGCTTCAGCGCACCTTCTGCCCCTCAGGCTGGCGAGGCGAGACAGGGACCAGGTCAAGTTCAAACCTTGAGGGCTGGTTAAGTCTCAGTGCAGTAAGAGTCACCAACCTGTCCTCCCGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCCATGAGGGAGATGAAGGTGGCACTGGCGCTGACTCTGCTGCGCTTCCGCGTCCTGCCAGGTGACAAGGAGCCTCGCCGGAAGCCAGAGCTGATCCTGCGCGCAGAGGGCGGGCTGTGGCTGCGGGTGGAGCCTCTGAGCAAGGGCACTCAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586:ENSMUST00000165999:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACCCCTTCCGCTTCGA
R:
TCACTGAGTGCCCTTGCTCA
Band lengths:
259-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types