GgaINT0035779 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNP0]
Coordinates
chr8:20790270-20790800:+
Coord C1 exon
chr8:20790270-20790352
Coord A exon
chr8:20790353-20790582
Coord C2 exon
chr8:20790583-20790800
Length
230 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
AGCCTTTGCCCTCTCCCCAGGAA
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTATTTGATCCCCTGAGGTTTTCTCCTGAGAACTCAGCACACAGGCATTCACATGCATTCCTGCCTTTCTCTGCTGGATCCAG
Seq A exon
GTGGGAAATCCTTCATCCCTCTCCCTCCTCATAGGTGCGTGGGGTTGTGCTCTGGATCCTAATCCCCTCAGCACCCCTGGGTCAAGTTGGCTTTGCCATCTCAAAGAGTCTCCATGATGGGATCTCTACTGAGCTCTGCTAGCTCCAGAGCACTTCCCACACCCAAGGCACTGGGAATGCAGGTCTCATTAACTTGCAGGCTTCAACCTGAGCCTTTGCCCTCTCCCCAG
Seq C2 exon
GAACTGCATTGGGCAGCAGTTTGCTATGAACGAGATGAAGGTGGCTCTGGCACTGACCCTGCTCCGCTTCGAGCTGTTCCCCAATGCCTCCAAGCCTCCTATGCTGACACAGCAGCTCATCCTCAAGTCCAGAAGCGGTATCCACCTGCATCTGAAAAAGATTTGCTGACCTGATGAGGTGCCACAAGCAGTTCCCAAAGGCCACTCTTCACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
NA
C2:
PF0006717=p450=PD(11.3=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGAGGTTTTCTCCTGA
R:
TCTGGGTGAAGAGTGGCCTTT
Band lengths:
292-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]