HsaINT0044546 @ hg19
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:20244]
Coordinates
chr1:47515094-47516423:+
Coord C1 exon
chr1:47515094-47515176
Coord A exon
chr1:47515177-47515671
Coord C2 exon
chr1:47515672-47516423
Length
495 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTTTCCCTCTTGTCTTCAGGAA
3' ss Score
11.1
Exon sequences
Seq C1 exon
GTCTTTGACCCCTTGAGGTTCTCTCAGGAGAATTCTGATCAGAGACACCCCTATGCCTACTTACCATTCTCAGCTGGATCAAG
Seq A exon
GTGAGAACAATTTGAAGTTGCTGAAAGTACCCAAAGATGTTTACTTGAGAGTAGTTTATTCCTTTCAGCTCCTCAGCTCTATACATTCTTCCAGGGAACCGTAGATCTTGGTGCCTATTTGAGCCCCAAAGGATCAGTTAGTTTTACAAAGGACAATCGTATTCTCTGTCACATCCTTTTTGGCCATGCCTCAAAAGCAGTCCCACAATGTAAGCTACTGCTCATAGGCTCAATGCAGTCCACCTTCAAAGCAAGAGAAATAATTTCATGAGTAACTCCAACTGCCGCCTTGTTATAGGGAAGGCATCATGTTGGAGCCTCCCAGCTCAAATTCTCACAGTGAACAATTTAAGTCTAAAGTTCAAAAGTTTCAATGGCATTTGGTGGAAAAATATCACTTTACTGTGTACTTCAGACTTATTGTACTAGTATTTTACTATAGTCAGAAGAAACATCATTTTTTCAAGTATCACTTTCTTTCCCTCTTGTCTTCAG
Seq C2 exon
GAACTGCATTGGGCAGGAGTTTGCCATGATTGAGTTAAAGGTAACCATTGCCTTGATTCTGCTCCACTTCAGAGTGACTCCAGACCCCACCAGGCCTCTTACTTTCCCCAACCATTTTATCCTCAAGCCCAAGAATGGGATGTATTTGCACCTGAAGAAACTCTCTGAATGTTAGATCTCAGGGTACAATGATTAAACGTACTTTGTTTTTCGAAGTTAAATTTACAGCTAATGATCCAAGCAGATAGAAAGGGATCAATGTATGGTGGGAGGATTGGAGGTTGGTGGGATAGGGGTCTCTGTGAAGAGATCCAAAATCATTTCTAGGTACACAGTGTGTCAGCTAGATCTGTTTCTATATAACTTTGGGAGATTTTCAGATCTTTTCTGTTAAACTTTCACTACTATTAATGCTGTATACACCAATAGACTTTCATATATTTTCTGTTGTTTTTAAAATAGTTTTCAGAATTATGCAAGTAATAAGTGCATGTATGCTCACTGTCAAAAATTCCCAACACTAGAAAATCATGTAGAATAAAAATTTTAAATCTCACTTCACTTAGCCGACATTCCATGCCCTGACCAATCCTACTGCTTTTCCTAAAAACAGAATAATTTGGTGTGCATTCTTTCAGACTTTTTCCTATACATTTTATATGTAGAAATGTAGCAATGTATTTGTATAGATGTGATCATTCCTATATTGTTATTGATTTTTTTCACTTAATAAAAATTCACCTTATTCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-CYP4X1:NM_178033:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.9=100)
A:
NA
C2:
PF0006717=p450=PD(10.9=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGAGACACCCCTATGCCT
R:
CCCTATCCCACCAACCTCCAA
Band lengths:
342-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)