MmuINT0045467 @ mm9
Intron Retention
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:114781287-114782716:-
Coord C1 exon
chr4:114782634-114782716
Coord A exon
chr4:114781462-114782633
Coord C2 exon
chr4:114781287-114781461
Length
1172 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTCTCCCTTGGTGTCTACAGGAA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GTCTTTGACCCCTTGAGATTCACTAAGGAGAATTCTGATCAGAGACACCCCTGTGCCTTCCTACCATTCTCCAGTGGTCCAAG
Seq A exon
GTGAGATGAACTTAAAGCTGTTGAAAATTTGCACAAAACGCTCCATAAATTCCTCCCCAGAACCTATCTCTTCACAAAGAACAATGCCTCTTTCTCTCGTGGCCCATGTGAGTCAAGGCTCAGGAAGCAATCTTGCAGTATAAATATTGCTCACGGGCTCAAAGTCACCTCCCCTTATAGGGGAGATATGTTGTGAGTGACTCCAGCTACCACCTACTTCAGGGAAGACATCACATCAGAACCTCCAAGTCCGCATTCTTGCAGGGAATGATATAAACATAAAGCCCAACCGTTTCAATGATATTTGGTATGAAAACTCTGCTTTACTGTTGTGTGGTATAAGAGACCTTTTTTGCTAGGAAGAAGAAACACAAACACATCTACTCACTCCAGAAAGATTATCCCTAACAAACCAAAATAAAGAATGTATTAGAGTCTACTTTGGTGAGACACCATGGTCAAGACAAACTTATAGAAGGAGTTTAGTGGGAGCTTACAGAGTCAGAGGGTGAAACCATGACTGTCATAAAGGGAAGCAAGGCAGCAGGCATGCAGGTGTTACACTAGAGCAGTAGCTGAGAGCTAAAGTCTGATGCTAAAGTCTGATTTACAAGCACCAGGCAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAACTGGGAATGGCTAGGCTTTTAGAACATCCCAGAGCAACACATCCTTCAACAAGACACACTTCCTAGTCCTTCCCATACTGTTCCATCAACTGTGGACCAAATATTCAAACATAAGATCCTATTGGGGGGCACTTCCATTCAAACCACCACAAGCTACATCACCCAAAAGCCCAAACCAGCACAAGTGACTGTTCACAAAAGCTACCACTCTGGAGCTCTCTACACAACTTGTAGGCATCTGGATATGTCTGAGAGGACTCTGGGTAGCACAGCTGGTCAGTCTCCTTCCCAGCAGTTCTTTACTGCTTCTATAACTCTGGGAAGAGCCCTCATGAAACTCCCAAGTCATGGTTTATCCAGACATGGACATAAGTCCTTTTCCCTTCCTCCTGAAAAGAATGTTTCAATCAGAGGAAACTGCTAAGCAGCTGTGGACTCCAGACTTATTCTAGAAACTTACCCCTCTCTCTCCCTTGGTGTCTACAG
Seq C2 exon
GAACTGCATCGGGCAGCAGTTTGCCATGCTGGAGCTAAAGGTGGCCATTGCCTTGATTCTGCTCCACTTTCAAGTAGCTCCAGACCTCACCAGGCCTCCTGCCTTCTCCAGCCACACTGTCCTCAGACCCAAGCATGGAATCTATTTGCACCTGAAGAAACTCCTTGAGTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155-Cyp4x1:NM_001003947:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.9=100)
A:
NA
C2:
PF0006717=p450=PD(11.2=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGACCCCTTGAGATTCACT
R:
ACACTCAAGGAGTTTCTTCAGGTG
Band lengths:
255-1427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: