BtaINT0046330 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99666161-99667231:-
Coord C1 exon
chr3:99667152-99667231
Coord A exon
chr3:99666330-99667151
Coord C2 exon
chr3:99666161-99666329
Length
822 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTTTTCTTGGTGTCTGCAGGAA
3' ss Score
10.62
Exon sequences
Seq C1 exon
GTCTTTGACCCCTTGAGGTTCTCCCAGGAATGTAATAAAAGACACTCCCATGCTTACTTACCATTCTCATCTGGACCAAG
Seq A exon
GTGAGGACTATTTGAAGTTTTTAAAAACACATAAAAATGTTTACCTGGAAACAGCCTTCTCGCTTCAGCCCCCCAGCTCTATAAGTTCTTCTATGGAAACTTATCTTCTCACCTGACCATGAGGTAGATCTTAGTGCCTGTTTGAGCCACTGAAAGTGTCAATTAGTTTCACGAAGGACAACACCGTTTGCTACGGCATCCTATACAGCCATGGCTCAGACGGCTAAACAGCAAGGCAAGCTGTTGCTCATGGGTTCAATGCAGGTTCACTCCCAATAAAGATGAGATGATTCTTTTTCAGAAAAACAATTTATTTCATCTTTTATTTCATCTTTATATTAGAATCTTAAATTGTAAGACACTTGATATATGCATCATGATGAGTCGATATACACTGTGAGAAGATTCCTTCCCATGTAGTTCATTAACATATTCTTCAGCTTACATACCTGTCCTTTTTTGTGTGTGAGAGGACATTTAAGTTCTTCTTTCTTAGCAAATTTCAGTTCTACAATACAGTGTATTACCAACTATGGTCATCATGTTTTATTATACATTAGAACTTCATGGCGGGTTGGGAGGGGGTGGAGGGAGGAACAATTCTGTGAGCAGCTCCAAGTGCCACCCTGTTTTGGAAGGGCATCAATTTGAACCTTCCAGCTCACATTCTTACAGGGAACAAGGTAAGTCCAAAGTCCAAAAGTTGGTATGGAATTTCATGTGCAAATGTATTGTTAACATCAGACTTGTTTTTCTAGTATCTTATTAAAGCATCAGAAGAAGTATCAGTTCTTCCAGTCTCTTTTTTCTTGGTGTCTGCAG
Seq C2 exon
GAACTGCATCGGGCAGAATTTTGCCATAGCTGAGATAAAGGTGATTGTTGCCTTGATTCTGCTCCGCTTCCAGATGAGAGTAGAGCCCACCAAGCCTGTTGTCTTCGTGCCCTACATTTTCATCAAACCCAAGAAGGGGATCTACTTGCACCTGAAGAAACTCCCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647:ENSBTAT00000020783:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
NA
C2:
PF0006717=p450=PD(11.7=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGACCCCTTGAGGTTCT
R:
AGGGGAGTTTCTTCAGGTGCA
Band lengths:
247-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]