HsaINT0044546 @ hg38
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450 family 4 subfamily X member 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr1:47049422-47050751:+
Coord C1 exon
chr1:47049422-47049504
Coord A exon
chr1:47049505-47049999
Coord C2 exon
chr1:47050000-47050751
Length
495 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTTTCCCTCTTGTCTTCAGGAA
3' ss Score
11.1
Exon sequences
Seq C1 exon
GTCTTTGACCCCTTGAGGTTCTCTCAGGAGAATTCTGATCAGAGACACCCCTATGCCTACTTACCATTCTCAGCTGGATCAAG
Seq A exon
GTGAGAACAATTTGAAGTTGCTGAAAGTACCCAAAGATGTTTACTTGAGAGTAGTTTATTCCTTTCAGCTCCTCAGCTCTATACATTCTTCCAGGGAACCGTAGATCTTGGTGCCTATTTGAGCCCCAAAGGATCAGTTAGTTTTACAAAGGACAATCGTATTCTCTGTCACATCCTTTTTGGCCATGCCTCAAAAGCAGTCCCACAATGTAAGCTACTGCTCATAGGCTCAATGCAGTCCACCTTCAAAGCAAGAGAAATAATTTCATGAGTAACTCCAACTGCCGCCTTGTTATAGGGAAGGCATCATGTTGGAGCCTCCCAGCTCAAATTCTCACAGTGAACAATTTAAGTCTAAAGTTCAAAAGTTTCAATGGCATTTGGTGGAAAAATATCACTTTACTGTGTACTTCAGACTTATTGTACTAGTATTTTACTATAGTCAGAAGAAACATCATTTTTTCAAGTATCACTTTCTTTCCCTCTTGTCTTCAG
Seq C2 exon
GAACTGCATTGGGCAGGAGTTTGCCATGATTGAGTTAAAGGTAACCATTGCCTTGATTCTGCTCCACTTCAGAGTGACTCCAGACCCCACCAGGCCTCTTACTTTCCCCAACCATTTTATCCTCAAGCCCAAGAATGGGATGTATTTGCACCTGAAGAAACTCTCTGAATGTTAGATCTCAGGGTACAATGATTAAACGTACTTTGTTTTTCGAAGTTAAATTTACAGCTAATGATCCAAGCAGATAGAAAGGGATCAATGTATGGTGGGAGGATTGGAGGTTGGTGGGATAGGGGTCTCTGTGAAGAGATCCAAAATCATTTCTAGGTACACAGTGTGTCAGCTAGATCTGTTTCTATATAACTTTGGGAGATTTTCAGATCTTTTCTGTTAAACTTTCACTACTATTAATGCTGTATACACCAATAGACTTTCATATATTTTCTGTTGTTTTTAAAATAGTTTTCAGAATTATGCAAGTAATAAGTGCATGTATGCTCACTGTCAAAAATTCCCAACACTAGAAAATCATGTAGAATAAAAATTTTAAATCTCACTTCACTTAGCCGACATTCCATGCCCTGACCAATCCTACTGCTTTTCCTAAAAACAGAATAATTTGGTGTGCATTCTTTCAGACTTTTTCCTATACATTTTATATGTAGAAATGTAGCAATGTATTTGTATAGATGTGATCATTCCTATATTGTTATTGATTTTTTTCACTTAATAAAAATTCACCTTATTCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377:ENST00000371901:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.9=100)
A:
NA
C2:
PF0006717=p450=PD(10.9=84.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGAGACACCCCTATGCCT
R:
CCCTATCCCACCAACCTCCAA
Band lengths:
342-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development