GgaINT0035779 @ galGal3
Intron Retention
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22612281-22613175:+
Coord C1 exon
chr8:22612281-22612363
Coord A exon
chr8:22612364-22612593
Coord C2 exon
chr8:22612594-22613175
Length
230 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
AGCCTTTGCCCTCTCCCCAGGAA
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTATTTGATCCCCTGAGGTTTTCTCCTGAGAACTCAGCACACAGGCATTCACATGCATTCCTGCCTTTCTCTGCTGGATCCAG
Seq A exon
GTGGGAAATCCTTCATCCCTCTCCCTCCTCATAGGTGCGTGGGGTTGTGCTCTGGATCCTAATCCCCTCAGCACCCCTGGGTCAAGTTGGCTTTGCCATCTCAAAGAGTCTCCATGATGGGATCTCTACTGAGCTCTGCTAGCTCCAGAGCACTTCCCACACCCAAGGCACTGGGAATGCAGGTCTCATTAACTTGCAGGCTTCAACCTGAGCCTTTGCCCTCTCCCCAG
Seq C2 exon
GAACTGCATTGGGCAGCAGTTTGCTATGAACGAGATGAAGGTGGCTCTGGCACTGACCCTGCTCCGCTTCGAGCTGTTCCCCAATGCCTCCAAGCCTCCTATGCTGACACAGCAGCTCATCCTCAAGTCCAGAAGCGGTATCCACCTGCATCTGAAAAAGATTTGCTGACCTGATGAGGTGCCACAAGCAGTTCCCAAAGGCCACTCTTCACCCAGAGGTGCCAACCTGTAGCCTTCCTGAACACCTGGGCCAGGGAGGGGGATACCCACCAGACCCACCTTATGTCTTACCCCCACTAACCCCACACTGAGAACCTTGTGCCCTGCAGGCTCAAGTCCCCTCCTTGCTGCAGGAGCAGCACTCCTGAGGTTTCTTGGAGGGTTAGCAGGGATCTTCTGTATTCTCCTCATCTCTAGCCTGTCCTGATGGGATTTCTATCTGAACGCCTCCACATTAAGCTCCGGGAAGAGCCCTGCCTTGATGAGCTGCAGGCTGGCATCGTGCCTGGCATTGCAGAAATGAAGGCCAGCAGGTTTTCCCGACCTGACACTGAACTTCCTGGAGCTGAGGGTGTTCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
NA
C2:
PF0006717=p450=PD(11.3=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCTTTCTCTGCTGGAT
R:
AAGGTGGGTCTGGTGGGTATC
Band lengths:
307-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]