HsaINT0044433 @ hg19
Intron Retention
Gene
ENSG00000162365 | CYP4A22
Description
cytochrome P450, family 4, subfamily A, polypeptide 22 [Source:HGNC Symbol;Acc:20575]
Coordinates
chr1:47611749-47614526:+
Coord C1 exon
chr1:47611749-47611825
Coord A exon
chr1:47611826-47614273
Coord C2 exon
chr1:47614274-47614526
Length
2448 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATTGTCTCCGCCTGGCCCAGGAA
3' ss Score
5.34
Exon sequences
Seq C1 exon
GTGTTTGACCCTTCCCGTTTTGCACCGGGTTCTGCTCAACACAGCCACGCTTTCCTGCCCTTCTCAGGAGGATCAAG
Seq A exon
GTGAGACGTCCTGTGTGGTAATTGGAATAGAGAAATGAGGGAAGTCTCTGGTCAACCCTCTGATCTTTGTGAGCCCGATGTTCATATGTGGCATCTTCAGGTGTGCTCTTAAATATTGGTATTTGTGGGAAAGTCAGGCACCTGGTGTGGGCGTCTCTGTGTACAAAAGGAAGGTGGCATTCAGAGCACCCCATGGAGACTTTGCTCCCTCTGCTTCTTCAAATGGGCAGCCTGAATTCACTGTCAGTGCATGTTCCAAACTTCAGTATATTCATGTATTTTCCTCACTTTAAGGATATGAATTCTCAAAATTAGATATTCTCCAGTAAATTCAACTTCAGCTGTTTGCTTTTCTCAGTTGTCAGGAATAGTAAACTGTAGATTTCTCTCTCCCCACACATCCTCAATGCAGCACACTACCTTCCCTATTTAATTCACTAGTCTGTCGTAGAGATGAATCATTGAAATCTTTGCATCTGTTTATAATACAGATGACCTGCAAGTCCTACCTTTCAAGCCATATAAGGGAGAGGTTAAGGTAGCCCTTTGAAGAAAGTTTTACAACAGTGTGTGTCATATCATACATTTTTCTGTCTTGCCCAATGACATTTTTACTTCATTATATAGTGTTCACATATTTACATCTATTTCCCCATTTGGCAAATTCTGTACATGCCTTGAGATCTTTATACCATAGTCCTGTAATCCACTTAGCACAATATTGGCCAAAAACATAAAAATGTGAACAGTACACTGTCTTGGAGAGAAAAGCCCAATAATTATCATATAACGCACAACATTTGAAGCCTCCTGGTATGTGAAATATAAAACACACTTGAAATAGCTATTGAGCTGGAGAGGAAAACTCCAGAATGGCTGCGGTGGAAATCATCGTGGCATCAGGAATCGTCCTGTGACATACACACAGGCAAAAATGATAAAAATTCTTAGTAGAAACAAAGTTTGTTCAAAGAAATAATTATGTGACTTCTTCAAATGGTGAGTCCACTTACATGGAACAGGAAAGCTTCCTCCTGAAACTCCTTCTCCAGCACTGGTCTGTCTATCCCAGCATGAGGAAGTCCTTGTAAACATTGCCTGCAAATCATGTCGCTGCCACTAGAGAACCGGAGAGCATTCCTAAGCTCCATTTCTAGCTCAGAACTAATATTTTACTCTCAGTGTATTTCATTCTATTTTATTCATTTTAAAACTTAAATAACATCATTCAAATATTAAAGTATTTCTTAAGCTACCTCTCTGGGTCAAGTCCTATGCAGCATGATGAGAAAACAGAGATAAAAGGTACAAAAATGTGTTGTACAGAAATATATCCTGTGCTCCAGACACACATCGTTCCATCAACCATTCTTTCACTCATTCACTCACTGAGTGGCTTGTTGAGTGTCCCTGTCCCTGGTGCTGTCCGTGGCACTGGACTGTGAGTGTTCATGGACAAATCACGAATGCTACCTGGGGGCCTGGGAGGAAGAGGCCCAGCTGGCAGGGAGTGAGAGGCAGCTGGGCTGTGACTTTAGCCTTGAGGATGTGGCAGGCAGAGGTGGAGGGAGGACATTCTCAGCCATCTCCACATGAACAGGGCTAGGATGTGGGCTGGACAGGTAAAATGTGGGTGAGGCAAGAGCCCACGGAGGGCTTGTCTGCCGGCTGAGGCATTGGGATGCTGTCCCACCTGTGATGAAGAGCGTGGGAGGGTCTGAGCTGGGCTGTGGCTTCAGTGTGCAGGGAGGGGAAGCAGAAATCCAGAAAGTCCAAGTGACAAGACTGAGGAAGGACAAGGATGGACGTTTCTGGAGTAGAGTTAGAAGGCTACAGGGGCTGGTGGATGGAGGAGTGAGGTTAGACAGGAGCCCGGACCCTGGGGTGGGAGGCAGGTGGGGCAACACTGAGGATCACCCACCCAGTTCTCCTCCAGGAAGCCTCCCACTGCCCTTCTGACTCCCTTAATACACCCATCGGGGACCCCCTATGAGGATTCAGGTCCCTGTGTGTCCCACTACGTGGGAAGCACCTGAGAGTGTGGCCCACCCTCACCCTACAGGACCTGAACTGACCTCCGCACTGGAGAACAAGAAATGTTTGTGGAGGAGTGAACAAACCATTGATTAACTCTTTATTTATTCATGTGATTAGACTCTGTGCCTTAGAGCCCTGGCCCTGTCTTGATAGAGGGTTTCAGGCTGCTGAGAGCAGAGGTAGAAGGTAGGAGTTAGGAGTTAGCCCAGGAAGACGGCTCTGTCCAAGGTTTGGGACAGTGTGAAGCCAGGATGGGGTAGAAGTGTCCGTGGGCTGTAAGTGTGCAGGGGCTGGACACATGAGGTTGGGCACTGAATGTCCAGCTCAGGGCTGGGGTCAGGGGCCAAAACCTGCTCAGATCAGAATGGGGCCTGAGGACACGTCTCAATTCATTGTCTCCGCCTGGCCCAG
Seq C2 exon
GAACTGCATCGGGAAACAATTTGCCATGAACCAGCTGAAGGTGGCCAGGGCCCTGACCCTGCTCCGCTTTGAGCTGCTGCCTGATCCCACCAGGATCCCCATCCCCATGGCACGACTTGTGTTGAAATCCAAAAATGGAATCCACCTGCGTCTCAGGAGGCTCCCTAACCCTTGTGAAGACAAGGACCAGCTTTGAGGGCCTCCACCTGCCATCCTGTCTTCCTGACCCCCACTCCTATCTCCTGCCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162365-CYP4A22:NM_001010969:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(6.2=92.6)
A:
NA
C2:
PF0006717=p450=PD(34.7=75.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)