MmuINT0045258 @ mm9
Intron Retention
Gene
ENSMUSG00000066072 | Cyp4a10
Description
cytochrome P450, family 4, subfamily a, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88611]
Coordinates
chr4:115202047-115205309:+
Coord C1 exon
chr4:115202047-115202123
Coord A exon
chr4:115202124-115205135
Coord C2 exon
chr4:115205136-115205309
Length
3012 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATTGTCCCTTTCTGACCCAGGAA
3' ss Score
8.89
Exon sequences
Seq C1 exon
GTGTTTGACCCTTCCAGGTTTGCACCAGACTCTCCCCGACACAGCCACTCATTCCTGCCCTTCTCAGGAGGAGCCAG
Seq A exon
GTGAGACATCCTGTGTATGATGATGGAATATACTGTGGAGAATATTTGCAGCATACCTTGGTTTTGGTCTCCTGCTTATATGACATCTCCAGGTATTTCCCGATAGGTGGCTATGGGAGGAGGAGGAGCTTATTGAGGATGTGTCTGTGCACTAAAGGAGGGTAGCACTTCAGCACACACTTTGAAGACATCAATCCATTTTTCAAACAAATTTATGTCAGTGGTTGCCATTCACTTGCATATGATCTAATATTTTCCTCACCTTAAGGGGAGGACTTTACATTGTTTTGTTTTGTTTCTTTAAGTGATTTTAACTTTAGGTATCCAGCTTGTCAAATTGTAGGGCTCTTACAAAGCATGTCTTTTCCACACCTCAACCTCACCCATCAACATTCCTAGGTAGTTCTTTATTCTGGAATCATTGTGCAGGTAGTTCATTTGCTTGCATGTCTGCCTGCCAAGGACATGCAAGCAACTGTCCAATGAGATATGTGAAGTGTTACAGTGGGTCATTTGAGGCAAGGTACATACCAGGACATGCTGATCCCACATTTGCACTCTTTCCTAACAGAATTTTTGAATCAATGTTGATACTCACATCTCTCTTGCAGTTAGTTGCCCAATGGCCAAAACTTGAGAGATAATGTATATTCCTCAAATTTAAAATTAGAAGCTATGTAGTCTAACTTCAGAGAAAAGGCATTAAAAAGGTGGAGAATAGTCTGCTTTTAAGTAAATCCTCTCTTTTATATATAACATAGCATTTTTTAAGGTCTCTAGTGAGTTGAAATAGCTCCTGAACTGGACAAAGACTTTCTGATGGCTTCTAGGGAAATTGTCCCTTGGGACCTCACTCAAGGTAAACTTTCAAAGGTGGTACAGAAGAAGGGTTTCATGAAATCGTGAATTGGCAAATCAGCTTTCACAGAACAGGCTATAAGTAAGTTGTTCTTTCAAGCACGGGCTATGCACACACATGGTGTACTTCAGGATTGAATGCTCTGCTTGCCACTCACTGCAAGCCATGTCTCTGCCACTAGAAGCCAGGAGAGTATTGGGCAACTCAGCTTAAGTTGGAAAGAACCATGCTGCTGCAGGTGCTTTCTAAGACAGAGTTTCAAGCTTGTCTGGAGCTCATGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCCCAAGAACTGGGATTCAGTCACAGGCTCCCACAGCTTGCTTTGATCTGAAGGTTTTTAATTTTTATTGTATTTCATTCTATTTTTTTCATTCCTTAAATTCAAATAAATTAAATTTTAAGAACCAAGAAAAAATAATTATTTTTAACATAAAATAAAGTTTAAACCACGCCTATGTGGCAGGTGCTATACTACATAAAAACATAGGAAAAGTGATACTATCCATTCCTGCCTTAAGAGTTCAAAACTGTCATCTACAAAGACAAAAATATCTGCAATTAAAATATATTCATCCTCCATTCTTTCACTTGCCCACTTAGCAGTTTGCAGAACATTCCATGTTCCTGCCATCATCCCATGCCCTGATTGTGTCATGCCCTTGAATATGGCACTAATGGTGCCTTAGGTGCTTAGGAGGAACAGGGACAGTCATTAAAAAAAAAAAATAAGAGCCAGCTACTCATTGACCTGAACTTTGGAAATATGAAGCCTAGGGGTGGGGTGGGGGAGTAGAGGTGGGGGAGACATGCTCAAACACCACAACAGCTTGATCTTAAGTAGGAAGTGGGAAAGGCAGGAAAGAGATGAGAGCAGCAGCCAGAAGAGGATAGAGCTGCAGCTAGGGCATTTGTTGTTTTTCTTTCGATTGTTTAATTTTCTTTTTACTTATTCACTTTATATCCCACTCACTGACTCCCTTCCAGTCATCCCTTCCAAAATTCTTTCCCCTTCCCCCTCCCCCCTTCCCCTCAAATCTGAGGAGGTGGGGGTCCCCCTGAGTATCCCTCCTCAACTCTGGCACTTCAAGTCTCTGTGAAACTAAGCACTTCCTCTCCCACTGAGGCCAGACAAAGCAGCCCAGCTAGAAGAACATATCTCACATACAGGCAATAGCAAAGCTCATCAAGAAGAAACGCCCAGATGACAGAGAATTTTACTTAGAAGGGGGAATAAAATAGTCATAAGAAGCAGATAGCAGGAGGGAACTAGGAGGGAGGATGGGGAGGGTAAAAGGGGTTCAGGATCAGGTGTGGAGAAGAACTAGCCATCAGGAGAGATGGCTGGTTGGCCATGAAAATGAATGGATATTTGAAACTGACTTAGGTGAGGAGGTAGGGGACATCTCCAGGATGAGACAGAGACCTGGGATACGGGAAGAGCCCAAGCATCAATGGGAATGACCTTATCTGTGACTCACTACACTGGGGATATGTAACCTGAAGAGGCAACTAGGCACGGAACACAGCCTGACCTGGTGGAGGTATAGAGGGTGAGCACGGAAAGAGGGTCAGGGACACCAAAGAAGTCCAGGAAAGGAAACTGAAGAAGGAATTGTGAACATTTCTGAAGTAGAGTTAAAAGTCTATAGAAGATGATGGATTAAGGAGGTGGGATACCCTAAGTAGGAGGCAGATAGGGCAGCCACTTGAGGATCCTCAACACAGTCTTCCTGTAGGAACTTTTCTACTGATAATCTGATTCCAGTCTGTAGAAGCTATGTGCTAGATCTCCCTAAATGGAGTAAACTGAGCAATGATTAACATATTAAATTATCCATAAGTTTGACCTCTAGTCCTTAAAATGCTGGCCTAACAGATTTCATAACACTAAAAGACGTAGGGTCAAAGTGGCCTTGAAAAATGTTGAGGCTATGTCAAAAATTCAGGAGAGACAAGACCTAGGGTGAAAGTAGGTATGACCTGTAGTCACGGCTGTTAGACTGAACCTGTGACAGTAGGCCCTGAATGTTGTTCTGGGCTGTTTCAAGAGTCAACCCTTAAATCAGGTGAGAGGCTAATGAGTTGTATTGTCCCTTTCTGACCCAG
Seq C2 exon
GAACTGCATTGGGAAACAATTTGCTATGAGTGAGCTGAAGGTGATTGTGGCCCTGACACTGCTCCGCTTCGAACTACTGCCAGATCCTACCAGGGTCCCCATGCCCTTAGCCCGACTTGTGCTGAAGTCCAAAAATGGGATCTACCTACATCTCAAGAAGCTCCACTGATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066072-Cyp4a10:NM_010011:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.5=100)
A:
NA
C2:
PF0006717=p450=PD(11.0=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: