GgaINT0039285 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20778831-20780775:+
Coord C1 exon
chr8:20778831-20778913
Coord A exon
chr8:20778914-20779068
Coord C2 exon
chr8:20779069-20780775
Length
155 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GATTGCTGTCTTTATGTCAGGAA
3' ss Score
6.39
Exon sequences
Seq C1 exon
GTGTTTGACCCACTGCGGTTTTCTCCAGAGAACGTATCTGGCAGGCACTCTCACGCCTTTCTGCCTTTTGCTGCTGGAATGAG
Seq A exon
GTAAAACACTGGGCATGGGAAGAGCAGTGGGGTGCAGAAACCTATGTCCCTGGCAATGGCTTAGCCCAGTGGAGCATGTGCCAAGGGCTCCTCTTTCCAGCCCCCTCAGTTGTCCCCTGCTCACGTCCCCTGGGTGATTGCTGTCTTTATGTCAG
Seq C2 exon
GAACTGCATTGGGCAGCAGTTTGCCATGATTGAGATGAAGGTGGCCCTGGCGCTGATCCTGCTCCGCTTCGAGCTGTCCCCTGACCTCACCAATCCCCCCCATAAGATACCTCGGCTCATCCTTCGCTCCAAGAACGGCATTCATTTGTACTTAAAGAAAATCCATTGATGCTGGAAAATGGCCTGAGTGTCAGTGGGAGGGACTGAGCAGACCAGGATGAAATGTTTGCCTCGGATACAGGGTGCACAGTAGCTTGGGGTACGAGGATTCCTAGCTCCTGTGTGGCTGCCAACATCCAAACTTGTCCCTGTGGGCACCCCAGTGCCTGCAGGTCAGCTCAGAGCTGACCTCACCTCTTCTCTCACTCAATGCCTGATTGCACTCAATGCACTGGTTACGGTTTGGGCTCGGAACTTTTGCTCAAGCTGCAAAATATGATGTGATTTTTGCATTAATAAACCATTGATTCCTGTAACAGCTGCTGTATTGAGTTTGGATTGCTAATCCTCGCCAACTCAGTCCCACCAGACAACCGAGCATCTCATAGAATCAATAAGGTTGGAAAAGACCTCTAAGATCATCCAACCATCAACCTGTCCCCACCCTGCCCTCTGACCATGTCCCTCAGTGCCACAGCTCCACAGTTTCTGAACACCTCCATGGATGGGGACCCCACCACCTCCCTGGGCAGCTATGCAAGCACATCACCATTCTTTCCAAGACAATATTTTTTCCTAATATCCGACCTGAACCAATGTTTTACTGAGGTTGTTAAGCATGGGACTGAAAGTTCCTCAATCTACTGCTGATGGGGATGATGGAATAGAGAGAATGCTTATTAAAAAAATCCAGATGTTATGAAACTTGGAGAGCCTGCAAGCAATTTGAAGGGTGGTATGAAGGTTTGAAATTATCTTGATAAATAGGGAAAAGTGCTCAAGTGATGAGGATGCAGCTCTGTAAGGGCACACACGGAGTGCAGAGACAGATGCAGGCATTGCACAAAACCTCAAAGGAGACAGCTGGCTGTGCAGCAGCCTCTCTAAAAAAGTGTTTTGAAGAGGTAGAAGACCATAACAGTAATGTGAATCAGCAATATCCTGCTGTTGTAATCAAAGCAAACACCGAACCTGGATACATAAATACAAATATTTCTCCAAAACCTTCCCTTGCATCTCCTTTCACTAAATGAAATGAGTGTCCTTCAGCTCTATTCTGAGATTCAAGCATAAAGGCAACTGCACATACTGCAAAATGTACCTTGCCAACATATTCTGAAATGCAAAATGAGAAAAATCATAAAGACTGCCAAGCTTTAGATGCAGACAGGTTACCTCATTCTTTAATCCTACTTTCTGCCAAAAGGGCAATTGCAGAGATGATGTACTAACCTTGGACTGCCCGATTCAGTCTTTTAGATAACTAATTTAACTAGCTCTCAAGAGATGGGCTCTGCTGAGTGCAGTAGGGTATGTATTCATTGGACTTCTTTCATTGCTACAGCTGAACAGCCCCATCTCTCACTAACCCACATCAGCCTGTTGGTGTCACCTTCTCACCAAGCACAGAGGGTGGCACATTGTCCCCAGGGGATGCGGTCCCTGCACGGGACCCATGTGGCTCTCAGTGCAAACCTGATGTCAGGTGCTACCAGCAATCCCCATCCAAACCCCACTGGGATTTTACACTGGGAGCAGCCTGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.9=100)
A:
NA
C2:
PF0006717=p450=PD(10.9=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTATCTGGCAGGCACTC
R:
CACTCAGGCCATTTTCCAGCA
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]