HsaINT0044444 @ hg19
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450, family 4, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:2644]
Coordinates
chr1:47283803-47285021:+
Coord C1 exon
chr1:47283803-47283885
Coord A exon
chr1:47283886-47284302
Coord C2 exon
chr1:47284303-47285021
Length
417 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTTTGTGCTGCTTGCTACAGGAA
3' ss Score
8.98
Exon sequences
Seq C1 exon
GTCTTTGACTCTCTGCGCTTTTCCACTGAGAATGCATCCAAACGCCATCCCTTTGCCTTTATGCCCTTCTCTGCTGGGCCCAG
Seq A exon
GTATGGAGAGACCCAGTATCCCAGGCCCTCAGGACTGGGGAGGAGAGGGTGGATGACATCATAGGGGAGGCACTATTAGAAGGTACTCTGAATAAAGGGGAATCATGCTGGGTTTGTGGTGGTTCTAATGCAGGAGGCTTCTTCTTGCAATTATCATATTCCTGTCCCTGGGAAGTGGGTGGGATAGATGAGTCATTCCAAGAGAGAACCCCATGCCAGACCCCCACCATGTGAATCTACCTGGTCTGGGACCCTCACCATGCTCCCAAGGTTTGTTTCATAAGCCCAGGTCAACCAATCTATCAGCCAGTTATTCATCCAAAAACAGTTATTGACTTTTGTTGGCTGCTAAGAGCACTGAATGTCATCACTCTGGATGCTCCATTGCACGATGACTCTTTGTGCTGCTTGCTACAG
Seq C2 exon
GAACTGCATTGGGCAGCAGTTTGCCATGAGTGAGATGAAGGTGGTCACAGCCATGTGCTTGCTCCGCTTTGAGTTCTCTCTGGACCCCTCACGGCTGCCCATCAAGATGCCCCAGCTTGTCCTGCGCTCCAAGAATGGCTTTCACCTCCACCTGAAGCCACTGGGCCCTGGGTCTGGGAAGTAGCTCTGATGAGAATGGGGTCCCAGATGGCTCAGGCTGTGACCTCCCTGGGCACCACCCTCCCCAGGCTGGGTGTGGAGGAGTTGGGGCCCCCTGCCTTCAGGAGGCTTGTAGTTTAGAAGGGAAGTAGGCATTACCATAGACGACTCCTAGAGGACAGTGCTATGTAAAAATGTGTGTCTATAAATGTTTATCATGCATGTATTCTAGAGCTCATTCATTTATTCAACAAACATTTGGTGAGCACCTATTTCGTTCGAGAAACTTCATTTATCTCCTATAATTGGCAAACTTAAAAATGCAGCAGAAACTTACATTCCAACCTTAGAGACTCATAGTGAGCACAAGGAAAGTTTTGCCCTGAGATTCATGGTTATGGCTGGGTACCACCAAATAGAAGAATGGCTTAGGGGAGTGCCCCTTCACTGAGATGTGTTTCTTTGTTGAACTTTGTGTGTGTGTGTTTAGAATATAACAGACATAAGAAAAAATTACCTAAATGAAGACTGTACAAAATAATAAATAATTCTGAAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973-CYP4B1:NM_001099772:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.9=100)
A:
NA
C2:
PF0006717=p450=PD(11.0=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCTGCGCTTTTCCACTG
R:
CCCAACTCCTCCACACCCAG
Band lengths:
345-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)