RnoINT0044535 @ rn6
Intron Retention
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134508730-134509747:-
Coord C1 exon
chr5:134509665-134509747
Coord A exon
chr5:134509294-134509664
Coord C2 exon
chr5:134508730-134509293
Length
371 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CTTTGTGCTGTTTGCTGCAGGAA
3' ss Score
10.88
Exon sequences
Seq C1 exon
GTCTTTGACCCACTGCGCTTTTCTCCTGAGAATGCTGCAGGACGGCATCCCTTTGCCTTCATGCCTTTTTCTGCAGGGCCCAG
Seq A exon
GTAGGGAGAGAGACAACCTTCCCAGGCCCTCACAGCTGGGGAGGAAAAGTGAATGCCATCTGCAGTGGGGGGCATCATTTTAGAGTGCTCTGTGACATAGGAGCCTTTTGCCACTTTTCCTGGGGAATGGGCAGGACAGATATTTTCATTCTGTGAGAGACTACCAGCCAGAACTCCCAATGTGAAGCTATCCAAAGGGGCCTTTACCATGCCCCTAAGATTTATGTTTTTTTTTAAGTCCAAGTTAATAGATCAACCATCCATTATGTGTCCAAAACTAGTGATTGGTTTTTGTGGGCCCCTAAAGAATACCAGACTCCATCAGTCTGGTTAGCCAACAGCTTGATGCTTCTTTGTGCTGTTTGCTGCAG
Seq C2 exon
GAATTGCATCGGGCAGCAGTTTGCCATGAACGAGATGAAGGTGGTCACAGCCCTTTGTTTACTGCGCTTTGAGTTCTCCCTGGATCCCTCAAAGATGCCCATTAAGGTCCCCCAGCTGATCTTGCGCTCCAAAAATGGTATCCACCTCTACCTGAAGCCGCTGGCTTCTAGGTCTGGAAAGTAGGTCTTCAGAGAACTAGGCCTGGGCAGCACAAGCCGTGACTCTTCCTGGGATGTTGCCCTCCTAGATAGAATGTGGAGTCATCATGGATCCCTGCCTGTGGGAGGCTTTGGAGGCAAAAGCATGGACACTGACAGTCTCCTGGAAGACATTCTCTTGTAAACATGTGTGTGGAATGATTCAACGCCCAGGCTCCAGAACTTATTTCTTCACTCCACAACATTTGCTGAACGTTTTGCTGCCTTGAGAAACTCCATTGATTTCACATAGCTACATTTATTTAACCATCTTGGTGTGTATTTGGAATACGATGGACATGAGGAAAATTGCTCAAACTAAAACTGTACAAAATAAATAATACTTTAAAAAGCAAACTCCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078:ENSRNOT00000013321:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.9=100)
A:
NA
C2:
PF0006717=p450=PD(11.0=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCTTTGCCTTCATGCCT
R:
CATGCTTTTGCCTCCAAAGCC
Band lengths:
345-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]