BtaINT0046280 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011976 | CYP4B1
Description
Bos taurus cytochrome P450, family 4, subfamily B, polypeptide 1 (CYP4B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076202]
Coordinates
chr3:99937185-99938063:-
Coord C1 exon
chr3:99937981-99938063
Coord A exon
chr3:99937573-99937980
Coord C2 exon
chr3:99937185-99937572
Length
408 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTTGTGCTGCTCATTGCAGGAA
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTCTTCGACCCCTTGCGCTTTTCTCCCGAGAACGTGGCCGGACGTCACAGCTTTGCCTTCATTCCCTTCTCTGCTGGGCCCAG
Seq A exon
GTAAGGAGAGCCCAACGTCCCTGTCCAGAGGTGAGGATGGAGGATGTCATGGAACATCCTTTGGGGGAACTCTGCGATGAGGAGGGCCATGCTGGGTGTGCGGTGACCCTGATGTGAGGGAAGTTCCAGGGACCCTCTTCCTGCCATTAGCATACTCTTGTCTTTGGCAGGTGGGGTGGGTGAGTCATTCCAAGAGAGACCCCTAAGTCACAACCCACAGTATGAACCTACCTAGTCTGGGACCCTCACTATGCCCCCAAGATCTGTTTCTGAAGACCAGGCCAATCAATCGATCAGTCAATGATTCATCCATACACAGTGACTGATTTCTGTTGGACACTTAGAGCGCTAGTTTTCATCACTCTGGATGTCTCATAGCCTGATGTCATTTTGTGCTGCTCATTGCAG
Seq C2 exon
GAACTGCATTGGCCAGCAGTTTGCTATGGCCGAGGTAAAGGTGGTCACAGCCCTCTGCTTGCTCCGTTTTGAGTTTTCCCCGGATCCCTCGAGGCTACCCATCAAGATGCCCCAACTGGTCCTACGCTCCAAGAATGGCATCCACCTCCATCTGAAGCCGCTGGGGCCAGGCTCTGAGAAGTAGCTCTGCTGAGATGAGAGCTCCAGACAGCCCAACCTGTGGCCTCTTCCTGGACGCTGCCCTCTCCAAGCTGGGTTGTAGAGTAGCTGTGCTCCCCTGTCTTCTGTAGGCTTATGGACTAGAATCAGAATAGGCATCTGATAGACAATCACCTCAAAGGCAATGCCATGTAAACATGTGTGTCTATAAATGCTTACTGCACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011976:ENSBTAT00000015892:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.9=100)
A:
NA
C2:
PF0006717=p450=PD(11.0=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCGCTTTTCTCCCGAGAA
R:
GGGGAGCACAGCTACTCTACA
Band lengths:
350-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]