MmuINT1008127 @ mm10
Intron Retention
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115624725-115625728:-
Coord C1 exon
chr4:115625646-115625728
Coord A exon
chr4:115625229-115625645
Coord C2 exon
chr4:115624725-115625228
Length
417 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTCTGTGTTGTTTGTTGCAGGAA
3' ss Score
12.03
Exon sequences
Seq C1 exon
GTCTTTGACCCACTGCGCTTTTCTCCTGAGAATATGACAGGACGGCATCCCTTTGCCTTCATGCCTTTTTCTGCAGGGCCCAG
Seq A exon
GTAGGTAGAGACACAACATTAACAGGCCCTCATGACTGGGGAGGAAAAGTGAAGGCCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGATCATCTTGCAGTGCTCTGTAACAAGGGGGCCCTTTTGCTATTTTTTCCTGTTCCTAGGAAATAGGTGGGACAGCTGTTTTCATTCTGTGAGAGACTGAAAGCCAGAGCTCCCAATGTGAAGCTACCCACTGGGACTTTTTACCATGCTCCTAAGATTTGTGTTTTTAAAGCCCACATCAACAAATCAACCAGCCATTGTGTGTCCAAAACTCGTTATTGTTTTTTGTGGGCCTCTAAGAACACTAACCTCCATCACTCTGGTTAGCCAACAGCTTGATGCTTCTCTGTGTTGTTTGTTGCAG
Seq C2 exon
GAATTGCATTGGGCAGCAGTTTGCTATGAACGAGATGAAGGTGGTCACAGCCCTCTGTTTGCTGCGCTTTGAATTCTCTCCAGATCCCTCAAAGATCCCCATTAAGGTCCCCCAGCTGATCTTGCGCTCCAAAAATGGCATCCACCTCTACCTGAAGCCACTGGGCCCTGGGTCTGGAAAGTAGGTCTTAGGAGAGCAAGGATATGGAGTCATTGTGGATCCCTGCCTGTGGGGGGTTTGTGAGATAAAAGCATGCACATTGAGAGTATCCTGGAAGACATTCTCTTGTAAACATGTGTGTGGAATGATTCAATGCCTGGGCTTTCAAACTCATTCCTTCACTCCACAAATATTTGCTGAATGTTTCCCTGTCTTGAGAAACTTCATTTATTTCTCATAACTGCATTTATTTAGCCATCTCAGTGTGCATTTTGGATATAATAGACATAAGGAAAATTGCTTAAACTAAATCTGTACAAAATAAATAATACTTTAAAAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713:ENSMUST00000102707:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(7.2=93.1)
A:
NA
C2:
PF0006717=p450=PD(11.0=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCCTTTTTCTGCAGGGC
R:
TGAGTTTGAAAGCCCAGGCAT
Band lengths:
358-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types