MmuALTD0002515-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:127100020-127113002:+
Coord C1 exon
chr8:127100020-127100120
Coord A exon
NA
Coord C2 exon
chr8:127112933-127113002
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
AGATGCTCTCAATCTTCCAGGAA
3' ss Score
8.48
Exon sequences
Seq C1 exon
TCCTCTAAGCTGCGGGGAAGCTGTCATGCCTTACCTGCATCGGTCCCTGAGGCCACAGCCACAGCCAGTCCCCGGGGATGCCAGGACTATCCACTCCTCAG
Seq A exon
NA
Seq C2 exon
GAAATTGTGGAAAAACCAGAATTCATTCTTGGAGGGGCCACCAGGACCGACATTTGCCAAGGGGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTAAGCTGCGGGGAAG
R:
CAGCTCCCCTTGGCAAATGTC
Band lengths:
170-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: