Special

MmuALTD0003579-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:196963005-196967477:-
Coord C1 exon
chr1:196967373-196967477
Coord A exon
chr1:196967369-196967372
Coord C2 exon
chr1:196963005-196965992
Length
4 bp
Sequences
Splice sites
5' ss Seq
TTGGTATAT
5' ss Score
1.75
3' ss Seq
TCTTTTTTTGTTGCCTGCAGATC
3' ss Score
12.43
Exon sequences
Seq C1 exon
CAATTATTATACAAAGACAAGACCCAAAGAAGGAGCTCTTCATTTAGAAACACGAGAAGTATATTCTATTGATCCATATAACCCAGCAAGCTGATGACATGACAA
Seq A exon
GTTG
Seq C2 exon
ATCAAGATGTAGAACTCTCAGCTACCTCTTCAGCACCATATCTGCTTACATGCCACCAAGCTACCCTCCACGACAATAATGGACTAAACCTCTGATTTGTAAGCCAGCCCCAATTAAATGTTTTTCTCTATAAGAGTTGTCAAAGTTATGGTGTCTCTTCACAGCAATAGAAACCCAAAATAAGACAGAAGTTGAAACTAGGGACTGGGGTATTGTTGTGATAGACCTGACCATGCTTTTGTTTGGAGACATGTGGACTTTGGGTTTGGAAAGCAGTGGAATGCTTTAAGCACAGTTTAATAGACCACCCTAGAAGGAGCACAGAAGACAATGATGTTTAGGGTGATTTGAACTATGAGGGCCTGGTTCAAGAGGTTTCAGATAAGAAGAACTTTAGTATGTGGCCTACAGATTGTTCTTGTGATATTTCAGAGAAGGTAGTGGCTGCTCTCTGCTCTTGTCAAAAAAAAAAAAAAAAAAATTGCCCATGGCTAAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-26-25,27-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
3' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.032 A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000080938





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:207658918-207658919 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:5298960-5299065 
HIGH PSI
BtaALTD0005990-1/2
(CR2)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACCCAGCAAGCTGATGACATG

				
R: 
AGGGTAGCTTGGTGGCATGTA

				
Band lengths: 
92-96

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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